Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1244

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1242 and Shewana3_1243 are separated by 18 nucleotidesShewana3_1243 and Shewana3_1244 are separated by 231 nucleotidesShewana3_1244 and Shewana3_1245 are separated by 160 nucleotidesShewana3_1245 and Shewana3_1246 overlap by 20 nucleotidesShewana3_1246 and Shewana3_1247 are separated by 25 nucleotides Shewana3_1242: Shewana3_1242 - cytochrome d ubiquinol oxidase, subunit II (RefSeq), at 1,457,124 to 1,458,263 _1242 Shewana3_1243: Shewana3_1243 - cyd operon protein YbgT (RefSeq), at 1,458,282 to 1,458,398 _1243 Shewana3_1244: Shewana3_1244 - phage integrase family protein (RefSeq), at 1,458,630 to 1,459,829 _1244 Shewana3_1245: Shewana3_1245 - hypothetical protein (RefSeq), at 1,459,990 to 1,460,373 _1245 Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659 _1246 Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503 _1247 Position (kb) 1458 1459 1460Strain fitness (log2 ratio) -1 0 1at 1457.640 kb on + strand, within Shewana3_1242at 1457.667 kb on - strand, within Shewana3_1242at 1457.701 kb on + strand, within Shewana3_1242at 1457.709 kb on - strand, within Shewana3_1242at 1457.738 kb on + strand, within Shewana3_1242at 1457.740 kb on + strand, within Shewana3_1242at 1457.843 kb on + strand, within Shewana3_1242at 1457.851 kb on - strand, within Shewana3_1242at 1457.916 kb on + strand, within Shewana3_1242at 1458.050 kb on + strand, within Shewana3_1242at 1458.179 kb on + strandat 1458.365 kb on + strand, within Shewana3_1243at 1458.416 kb on - strandat 1458.551 kb on - strandat 1458.613 kb on + strandat 1458.725 kb on + strandat 1458.791 kb on + strand, within Shewana3_1244at 1458.799 kb on - strand, within Shewana3_1244at 1459.032 kb on + strand, within Shewana3_1244at 1459.100 kb on + strand, within Shewana3_1244at 1459.100 kb on + strand, within Shewana3_1244at 1459.186 kb on + strand, within Shewana3_1244at 1459.186 kb on + strand, within Shewana3_1244at 1459.186 kb on + strand, within Shewana3_1244at 1459.186 kb on + strand, within Shewana3_1244at 1459.194 kb on - strand, within Shewana3_1244at 1459.194 kb on - strand, within Shewana3_1244at 1459.194 kb on - strand, within Shewana3_1244at 1459.246 kb on - strand, within Shewana3_1244at 1459.390 kb on + strand, within Shewana3_1244at 1459.390 kb on + strand, within Shewana3_1244at 1459.453 kb on - strand, within Shewana3_1244at 1459.563 kb on - strand, within Shewana3_1244at 1459.570 kb on - strand, within Shewana3_1244at 1459.798 kb on - strandat 1459.907 kb on + strandat 1460.157 kb on - strand, within Shewana3_1245

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,457,640 + Shewana3_1242 0.45 -0.3
1,457,667 - Shewana3_1242 0.48 +0.1
1,457,701 + Shewana3_1242 0.51 -0.3
1,457,709 - Shewana3_1242 0.51 -0.5
1,457,738 + Shewana3_1242 0.54 +0.6
1,457,740 + Shewana3_1242 0.54 -1.2
1,457,843 + Shewana3_1242 0.63 -1.2
1,457,851 - Shewana3_1242 0.64 +1.1
1,457,916 + Shewana3_1242 0.69 -0.7
1,458,050 + Shewana3_1242 0.81 -0.7
1,458,179 + -1.5
1,458,365 + Shewana3_1243 0.71 -1.0
1,458,416 - -0.6
1,458,551 - +1.1
1,458,613 + -0.6
1,458,725 + -0.7
1,458,791 + Shewana3_1244 0.13 +0.6
1,458,799 - Shewana3_1244 0.14 -0.4
1,459,032 + Shewana3_1244 0.34 -0.2
1,459,100 + Shewana3_1244 0.39 -1.3
1,459,100 + Shewana3_1244 0.39 -1.2
1,459,186 + Shewana3_1244 0.46 -0.9
1,459,186 + Shewana3_1244 0.46 -0.9
1,459,186 + Shewana3_1244 0.46 -1.1
1,459,186 + Shewana3_1244 0.46 +0.3
1,459,194 - Shewana3_1244 0.47 -0.2
1,459,194 - Shewana3_1244 0.47 +0.7
1,459,194 - Shewana3_1244 0.47 +0.5
1,459,246 - Shewana3_1244 0.51 +0.1
1,459,390 + Shewana3_1244 0.63 -0.6
1,459,390 + Shewana3_1244 0.63 -1.2
1,459,453 - Shewana3_1244 0.69 -0.9
1,459,563 - Shewana3_1244 0.78 +0.4
1,459,570 - Shewana3_1244 0.78 +0.2
1,459,798 - +0.4
1,459,907 + -1.3
1,460,157 - Shewana3_1245 0.43 +0.0

Or see this region's nucleotide sequence