Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1154

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1153 and Shewana3_1154 are separated by 379 nucleotidesShewana3_1154 and Shewana3_1155 are separated by 55 nucleotides Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868 _1153 Shewana3_1154: Shewana3_1154 - isochorismatase hydrolase (RefSeq), at 1,361,248 to 1,361,793 _1154 Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571 _1155 Position (kb) 1361 1362Strain fitness (log2 ratio) -1 0 1 2at 1360.549 kb on + strand, within Shewana3_1153at 1360.602 kb on + strand, within Shewana3_1153at 1360.783 kb on + strandat 1360.786 kb on - strandat 1360.851 kb on - strandat 1360.999 kb on + strandat 1361.181 kb on + strandat 1361.191 kb on + strandat 1361.307 kb on + strand, within Shewana3_1154at 1361.315 kb on - strand, within Shewana3_1154at 1361.429 kb on + strand, within Shewana3_1154at 1361.700 kb on + strand, within Shewana3_1154at 1361.708 kb on - strand, within Shewana3_1154at 1361.735 kb on - strand, within Shewana3_1154at 1361.889 kb on + strandat 1362.020 kb on - strand, within Shewana3_1155at 1362.266 kb on - strand, within Shewana3_1155at 1362.271 kb on + strand, within Shewana3_1155at 1362.279 kb on - strand, within Shewana3_1155at 1362.395 kb on + strand, within Shewana3_1155at 1362.440 kb on + strand, within Shewana3_1155at 1362.559 kb on - strandat 1362.712 kb on - strandat 1362.744 kb on - strandat 1362.773 kb on + strandat 1362.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,360,549 + Shewana3_1153 0.72 +0.4
1,360,602 + Shewana3_1153 0.77 -0.3
1,360,783 + -0.4
1,360,786 - -1.0
1,360,851 - +0.7
1,360,999 + -0.6
1,361,181 + +0.3
1,361,191 + +0.0
1,361,307 + Shewana3_1154 0.11 +1.8
1,361,315 - Shewana3_1154 0.12 +0.7
1,361,429 + Shewana3_1154 0.33 -0.3
1,361,700 + Shewana3_1154 0.83 +0.6
1,361,708 - Shewana3_1154 0.84 +0.3
1,361,735 - Shewana3_1154 0.89 -0.1
1,361,889 + +0.5
1,362,020 - Shewana3_1155 0.24 -1.0
1,362,266 - Shewana3_1155 0.58 -0.9
1,362,271 + Shewana3_1155 0.58 +0.5
1,362,279 - Shewana3_1155 0.59 -0.8
1,362,395 + Shewana3_1155 0.76 +0.8
1,362,440 + Shewana3_1155 0.82 +0.2
1,362,559 - -1.1
1,362,712 - -0.2
1,362,744 - -0.9
1,362,773 + +0.1
1,362,781 - +0.2

Or see this region's nucleotide sequence