Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1147

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1145 and Shewana3_1146 are separated by 129 nucleotidesShewana3_1146 and Shewana3_1147 are separated by 99 nucleotidesShewana3_1147 and Shewana3_1148 overlap by 4 nucleotides Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200 _1145 Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767 _1146 Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217 _1147 Shewana3_1148: Shewana3_1148 - PepSY-associated TM helix domain-containing protein (RefSeq), at 1,354,214 to 1,355,896 _1148 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -1 0 1at 1352.869 kb on + strand, within Shewana3_1145at 1352.941 kb on + strand, within Shewana3_1145at 1352.983 kb on + strand, within Shewana3_1145at 1353.509 kb on + strand, within Shewana3_1146at 1353.581 kb on - strand, within Shewana3_1146at 1353.797 kb on - strandat 1353.841 kb on + strandat 1353.892 kb on + strandat 1353.897 kb on + strandat 1354.022 kb on - strand, within Shewana3_1147at 1354.165 kb on - strand, within Shewana3_1147at 1354.229 kb on + strandat 1354.410 kb on - strand, within Shewana3_1148at 1354.570 kb on + strand, within Shewana3_1148at 1354.578 kb on - strand, within Shewana3_1148at 1354.880 kb on - strand, within Shewana3_1148at 1354.972 kb on + strand, within Shewana3_1148

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,352,869 + Shewana3_1145 0.22 -1.2
1,352,941 + Shewana3_1145 0.39 +0.8
1,352,983 + Shewana3_1145 0.48 +0.2
1,353,509 + Shewana3_1146 0.41 +0.2
1,353,581 - Shewana3_1146 0.57 -1.1
1,353,797 - +0.3
1,353,841 + +1.7
1,353,892 + +0.2
1,353,897 + +1.3
1,354,022 - Shewana3_1147 0.44 +0.7
1,354,165 - Shewana3_1147 0.85 +1.0
1,354,229 + +0.7
1,354,410 - Shewana3_1148 0.12 +1.0
1,354,570 + Shewana3_1148 0.21 +0.9
1,354,578 - Shewana3_1148 0.22 -0.9
1,354,880 - Shewana3_1148 0.40 +0.2
1,354,972 + Shewana3_1148 0.45 +0.9

Or see this region's nucleotide sequence