Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0832

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0831 and Shewana3_0832 are separated by 257 nucleotidesShewana3_0832 and Shewana3_0833 are separated by 102 nucleotides Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621 _0831 Shewana3_0832: Shewana3_0832 - glutamate-ammonia ligase adenylyltransferase (RefSeq), at 962,879 to 965,743 _0832 Shewana3_0833: Shewana3_0833 - diguanylate cyclase with GAF sensor (RefSeq), at 965,846 to 966,814 _0833 Position (kb) 962 963 964 965 966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 962.346 kb on + strand, within Shewana3_0831at 962.369 kb on - strand, within Shewana3_0831at 962.427 kb on + strand, within Shewana3_0831at 962.439 kb on - strand, within Shewana3_0831at 962.449 kb on + strand, within Shewana3_0831at 962.467 kb on + strand, within Shewana3_0831at 962.509 kb on - strand, within Shewana3_0831at 962.539 kb on - strandat 962.702 kb on + strandat 962.710 kb on - strandat 962.803 kb on + strandat 962.906 kb on - strandat 962.941 kb on + strandat 962.975 kb on - strandat 963.081 kb on - strandat 963.081 kb on - strandat 963.153 kb on - strandat 963.239 kb on + strand, within Shewana3_0832at 963.247 kb on - strand, within Shewana3_0832at 963.249 kb on + strand, within Shewana3_0832at 963.263 kb on + strand, within Shewana3_0832at 963.263 kb on + strand, within Shewana3_0832at 963.279 kb on - strand, within Shewana3_0832at 963.303 kb on + strand, within Shewana3_0832at 963.456 kb on + strand, within Shewana3_0832at 963.833 kb on - strand, within Shewana3_0832at 963.833 kb on - strand, within Shewana3_0832at 963.833 kb on - strand, within Shewana3_0832at 963.938 kb on - strand, within Shewana3_0832at 963.995 kb on - strand, within Shewana3_0832at 963.995 kb on - strand, within Shewana3_0832at 963.995 kb on - strand, within Shewana3_0832at 964.136 kb on + strand, within Shewana3_0832at 964.136 kb on + strand, within Shewana3_0832at 964.136 kb on + strand, within Shewana3_0832at 964.144 kb on - strand, within Shewana3_0832at 964.144 kb on - strand, within Shewana3_0832at 964.178 kb on - strand, within Shewana3_0832at 964.218 kb on + strand, within Shewana3_0832at 964.240 kb on + strand, within Shewana3_0832at 964.260 kb on - strand, within Shewana3_0832at 964.275 kb on - strand, within Shewana3_0832at 964.447 kb on - strand, within Shewana3_0832at 964.559 kb on - strand, within Shewana3_0832at 964.561 kb on + strand, within Shewana3_0832at 964.581 kb on - strand, within Shewana3_0832at 964.723 kb on + strand, within Shewana3_0832at 964.815 kb on + strand, within Shewana3_0832at 964.832 kb on + strand, within Shewana3_0832at 964.953 kb on - strand, within Shewana3_0832at 965.119 kb on - strand, within Shewana3_0832at 965.159 kb on + strand, within Shewana3_0832at 965.242 kb on + strand, within Shewana3_0832at 965.242 kb on + strand, within Shewana3_0832at 965.323 kb on + strand, within Shewana3_0832at 965.517 kb on + strandat 965.525 kb on - strandat 965.590 kb on + strandat 965.610 kb on - strandat 966.018 kb on + strand, within Shewana3_0833at 966.490 kb on + strand, within Shewana3_0833at 966.490 kb on + strand, within Shewana3_0833at 966.498 kb on - strand, within Shewana3_0833at 966.498 kb on - strand, within Shewana3_0833at 966.498 kb on - strand, within Shewana3_0833at 966.498 kb on - strand, within Shewana3_0833at 966.558 kb on - strand, within Shewana3_0833at 966.625 kb on - strand, within Shewana3_0833

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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962,346 + Shewana3_0831 0.72 -1.3
962,369 - Shewana3_0831 0.74 -0.1
962,427 + Shewana3_0831 0.80 +0.7
962,439 - Shewana3_0831 0.81 -1.0
962,449 + Shewana3_0831 0.82 -0.1
962,467 + Shewana3_0831 0.84 -0.3
962,509 - Shewana3_0831 0.88 -0.2
962,539 - -1.2
962,702 + -0.1
962,710 - -0.4
962,803 + -0.9
962,906 - -1.1
962,941 + +0.1
962,975 - -0.8
963,081 - -0.7
963,081 - -1.2
963,153 - -1.4
963,239 + Shewana3_0832 0.13 -2.0
963,247 - Shewana3_0832 0.13 -1.7
963,249 + Shewana3_0832 0.13 +0.6
963,263 + Shewana3_0832 0.13 -1.4
963,263 + Shewana3_0832 0.13 -2.1
963,279 - Shewana3_0832 0.14 -0.5
963,303 + Shewana3_0832 0.15 -1.1
963,456 + Shewana3_0832 0.20 -1.9
963,833 - Shewana3_0832 0.33 -1.4
963,833 - Shewana3_0832 0.33 -0.7
963,833 - Shewana3_0832 0.33 -0.5
963,938 - Shewana3_0832 0.37 -0.8
963,995 - Shewana3_0832 0.39 -0.9
963,995 - Shewana3_0832 0.39 -0.6
963,995 - Shewana3_0832 0.39 -0.1
964,136 + Shewana3_0832 0.44 -3.8
964,136 + Shewana3_0832 0.44 -1.8
964,136 + Shewana3_0832 0.44 -4.4
964,144 - Shewana3_0832 0.44 -0.9
964,144 - Shewana3_0832 0.44 -0.6
964,178 - Shewana3_0832 0.45 +0.0
964,218 + Shewana3_0832 0.47 -3.3
964,240 + Shewana3_0832 0.48 -2.8
964,260 - Shewana3_0832 0.48 -1.0
964,275 - Shewana3_0832 0.49 -0.9
964,447 - Shewana3_0832 0.55 -0.6
964,559 - Shewana3_0832 0.59 -1.7
964,561 + Shewana3_0832 0.59 -3.0
964,581 - Shewana3_0832 0.59 -2.9
964,723 + Shewana3_0832 0.64 -1.2
964,815 + Shewana3_0832 0.68 -0.2
964,832 + Shewana3_0832 0.68 -1.1
964,953 - Shewana3_0832 0.72 -1.5
965,119 - Shewana3_0832 0.78 -0.6
965,159 + Shewana3_0832 0.80 -0.8
965,242 + Shewana3_0832 0.82 -1.6
965,242 + Shewana3_0832 0.82 -1.0
965,323 + Shewana3_0832 0.85 -1.4
965,517 + -1.1
965,525 - -1.9
965,590 + -0.8
965,610 - -0.6
966,018 + Shewana3_0833 0.18 +0.2
966,490 + Shewana3_0833 0.66 -1.7
966,490 + Shewana3_0833 0.66 +0.3
966,498 - Shewana3_0833 0.67 -1.3
966,498 - Shewana3_0833 0.67 -1.0
966,498 - Shewana3_0833 0.67 +0.2
966,498 - Shewana3_0833 0.67 -0.9
966,558 - Shewana3_0833 0.73 -0.8
966,625 - Shewana3_0833 0.80 -1.2

Or see this region's nucleotide sequence