Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0336

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0335 and Shewana3_0336 overlap by 4 nucleotidesShewana3_0336 and Shewana3_0337 are separated by 8 nucleotidesShewana3_0337 and Shewana3_0338 overlap by 8 nucleotides Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836 _0335 Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653 _0336 Shewana3_0337: Shewana3_0337 - thioester dehydrase family protein (RefSeq), at 373,662 to 374,036 _0337 Shewana3_0338: Shewana3_0338 - aconitate hydratase (RefSeq), at 374,029 to 375,393 _0338 Position (kb) 371 372 373 374Strain fitness (log2 ratio) -1 0 1at 370.869 kb on - strand, within Shewana3_0335at 371.002 kb on + strand, within Shewana3_0335at 371.015 kb on + strand, within Shewana3_0335at 371.427 kb on + strand, within Shewana3_0335at 371.447 kb on + strand, within Shewana3_0335at 371.547 kb on - strand, within Shewana3_0335at 371.607 kb on + strand, within Shewana3_0335at 371.607 kb on + strand, within Shewana3_0335at 371.761 kb on + strandat 371.846 kb on + strandat 371.849 kb on - strandat 371.946 kb on + strandat 372.009 kb on - strandat 372.282 kb on + strand, within Shewana3_0336at 372.290 kb on - strand, within Shewana3_0336at 372.314 kb on - strand, within Shewana3_0336at 372.431 kb on + strand, within Shewana3_0336at 372.441 kb on + strand, within Shewana3_0336at 372.543 kb on - strand, within Shewana3_0336at 372.939 kb on + strand, within Shewana3_0336at 372.939 kb on + strand, within Shewana3_0336at 372.947 kb on - strand, within Shewana3_0336at 372.968 kb on + strand, within Shewana3_0336at 373.128 kb on - strand, within Shewana3_0336at 373.142 kb on - strand, within Shewana3_0336at 373.142 kb on - strand, within Shewana3_0336at 373.245 kb on + strand, within Shewana3_0336at 373.264 kb on - strand, within Shewana3_0336at 373.422 kb on - strand, within Shewana3_0336at 373.455 kb on - strand, within Shewana3_0336at 373.470 kb on + strand, within Shewana3_0336at 373.546 kb on + strandat 373.549 kb on - strandat 373.588 kb on - strandat 374.140 kb on - strandat 374.254 kb on - strand, within Shewana3_0338at 374.302 kb on - strand, within Shewana3_0338at 374.507 kb on - strand, within Shewana3_0338at 374.508 kb on - strand, within Shewana3_0338at 374.594 kb on + strand, within Shewana3_0338at 374.602 kb on - strand, within Shewana3_0338at 374.604 kb on + strand, within Shewana3_0338at 374.612 kb on - strand, within Shewana3_0338at 374.612 kb on - strand, within Shewana3_0338

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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370,869 - Shewana3_0335 0.38 +0.1
371,002 + Shewana3_0335 0.47 -0.2
371,015 + Shewana3_0335 0.48 +0.2
371,427 + Shewana3_0335 0.74 -0.1
371,447 + Shewana3_0335 0.75 +0.5
371,547 - Shewana3_0335 0.81 -0.2
371,607 + Shewana3_0335 0.85 +0.8
371,607 + Shewana3_0335 0.85 -0.3
371,761 + +0.8
371,846 + +0.1
371,849 - +0.2
371,946 + +0.0
372,009 - +0.3
372,282 + Shewana3_0336 0.25 +0.4
372,290 - Shewana3_0336 0.25 -1.0
372,314 - Shewana3_0336 0.26 +0.2
372,431 + Shewana3_0336 0.33 +0.0
372,441 + Shewana3_0336 0.33 +0.4
372,543 - Shewana3_0336 0.39 -1.1
372,939 + Shewana3_0336 0.61 +0.1
372,939 + Shewana3_0336 0.61 -1.5
372,947 - Shewana3_0336 0.61 +0.4
372,968 + Shewana3_0336 0.62 -1.3
373,128 - Shewana3_0336 0.71 -1.1
373,142 - Shewana3_0336 0.72 +0.8
373,142 - Shewana3_0336 0.72 +0.2
373,245 + Shewana3_0336 0.78 -0.2
373,264 - Shewana3_0336 0.79 +0.5
373,422 - Shewana3_0336 0.87 +0.2
373,455 - Shewana3_0336 0.89 +0.5
373,470 + Shewana3_0336 0.90 -0.4
373,546 + +0.6
373,549 - -1.0
373,588 - +0.3
374,140 - +0.7
374,254 - Shewana3_0338 0.16 -1.4
374,302 - Shewana3_0338 0.20 -1.5
374,507 - Shewana3_0338 0.35 +0.2
374,508 - Shewana3_0338 0.35 +0.2
374,594 + Shewana3_0338 0.41 -0.0
374,602 - Shewana3_0338 0.42 -1.3
374,604 + Shewana3_0338 0.42 -0.9
374,612 - Shewana3_0338 0.43 +0.1
374,612 - Shewana3_0338 0.43 -1.2

Or see this region's nucleotide sequence