Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nudE and Shewana3_0170 are separated by 70 nucleotides Shewana3_0170 and Shewana3_0171 are separated by 6 nucleotides Shewana3_0171 and Shewana3_0172 are separated by 230 nucleotides Shewana3_0172 and Shewana3_0173 overlap by 10 nucleotides
Shewana3_0169: nudE - ADP-ribose diphosphatase NudE (RefSeq), at 202,502 to 203,053
nudE
Shewana3_0170: Shewana3_0170 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 203,124 to 203,936
_0170
Shewana3_0171: Shewana3_0171 - GCN5-related N-acetyltransferase (RefSeq), at 203,943 to 204,386
_0171
Shewana3_0172: Shewana3_0172 - TetR family transcriptional regulator (RefSeq), at 204,617 to 205,228
_0172
Shewana3_0173: Shewana3_0173 - phospholipid/glycerol acyltransferase (RefSeq), at 205,219 to 207,084
_0173
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1 at 202.978 kb on - strand, within nudE at 203.319 kb on - strand, within Shewana3_0170 at 203.319 kb on - strand, within Shewana3_0170 at 203.319 kb on - strand, within Shewana3_0170 at 203.346 kb on - strand, within Shewana3_0170 at 203.424 kb on + strand, within Shewana3_0170 at 203.685 kb on + strand, within Shewana3_0170 at 203.685 kb on + strand, within Shewana3_0170 at 203.700 kb on + strand, within Shewana3_0170 at 203.700 kb on + strand, within Shewana3_0170 at 203.824 kb on - strand, within Shewana3_0170 at 204.166 kb on - strand, within Shewana3_0171 at 204.220 kb on + strand, within Shewana3_0171 at 204.449 kb on - strand at 204.491 kb on - strand at 204.602 kb on - strand at 204.604 kb on - strand at 204.607 kb on + strand at 204.657 kb on - strand at 204.661 kb on + strand at 204.707 kb on - strand, within Shewana3_0172 at 204.707 kb on - strand, within Shewana3_0172 at 204.957 kb on + strand, within Shewana3_0172 at 205.100 kb on - strand, within Shewana3_0172
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 202,978 - nudE Shewana3_0169 0.86 -1.6 203,319 - Shewana3_0170 0.24 -1.9 203,319 - Shewana3_0170 0.24 -1.9 203,319 - Shewana3_0170 0.24 -1.2 203,346 - Shewana3_0170 0.27 -1.5 203,424 + Shewana3_0170 0.37 -2.3 203,685 + Shewana3_0170 0.69 -1.7 203,685 + Shewana3_0170 0.69 -1.8 203,700 + Shewana3_0170 0.71 -0.9 203,700 + Shewana3_0170 0.71 -2.4 203,824 - Shewana3_0170 0.86 -1.5 204,166 - Shewana3_0171 0.50 +0.2 204,220 + Shewana3_0171 0.62 -1.0 204,449 - +0.5 204,491 - -1.0 204,602 - +0.4 204,604 - -1.1 204,607 + +0.3 204,657 - +0.1 204,661 + +0.3 204,707 - Shewana3_0172 0.15 -1.1 204,707 - Shewana3_0172 0.15 -1.1 204,957 + Shewana3_0172 0.56 -1.0 205,100 - Shewana3_0172 0.79 +0.9
Or see this region's nucleotide sequence