Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0169

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0168 and nudE are separated by 237 nucleotidesnudE and Shewana3_0170 are separated by 70 nucleotidesShewana3_0170 and Shewana3_0171 are separated by 6 nucleotides Shewana3_0168: Shewana3_0168 - Ig family protein (RefSeq), at 191,630 to 202,264 _0168 Shewana3_0169: nudE - ADP-ribose diphosphatase NudE (RefSeq), at 202,502 to 203,053 nudE Shewana3_0170: Shewana3_0170 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 203,124 to 203,936 _0170 Shewana3_0171: Shewana3_0171 - GCN5-related N-acetyltransferase (RefSeq), at 203,943 to 204,386 _0171 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1at 201.605 kb on + strandat 201.628 kb on - strandat 201.641 kb on + strandat 201.704 kb on - strandat 201.813 kb on - strandat 201.831 kb on - strandat 201.844 kb on + strandat 201.999 kb on + strandat 202.027 kb on + strandat 202.118 kb on + strandat 202.187 kb on + strandat 202.470 kb on - strandat 202.602 kb on - strand, within nudEat 202.803 kb on + strand, within nudEat 202.818 kb on + strand, within nudEat 202.818 kb on + strand, within nudEat 202.887 kb on + strand, within nudEat 202.978 kb on - strand, within nudEat 203.319 kb on - strand, within Shewana3_0170at 203.319 kb on - strand, within Shewana3_0170at 203.319 kb on - strand, within Shewana3_0170at 203.346 kb on - strand, within Shewana3_0170at 203.424 kb on + strand, within Shewana3_0170at 203.685 kb on + strand, within Shewana3_0170at 203.685 kb on + strand, within Shewana3_0170at 203.700 kb on + strand, within Shewana3_0170at 203.700 kb on + strand, within Shewana3_0170at 203.824 kb on - strand, within Shewana3_0170

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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201,605 + +0.2
201,628 - +0.5
201,641 + +0.4
201,704 - +0.4
201,813 - +0.2
201,831 - -1.2
201,844 + +0.1
201,999 + +0.8
202,027 + +0.3
202,118 + +0.8
202,187 + +1.1
202,470 - -1.0
202,602 - nudE Shewana3_0169 0.18 -1.0
202,803 + nudE Shewana3_0169 0.55 -0.1
202,818 + nudE Shewana3_0169 0.57 -1.4
202,818 + nudE Shewana3_0169 0.57 +0.6
202,887 + nudE Shewana3_0169 0.70 -0.5
202,978 - nudE Shewana3_0169 0.86 -1.6
203,319 - Shewana3_0170 0.24 -1.9
203,319 - Shewana3_0170 0.24 -1.9
203,319 - Shewana3_0170 0.24 -1.2
203,346 - Shewana3_0170 0.27 -1.5
203,424 + Shewana3_0170 0.37 -2.3
203,685 + Shewana3_0170 0.69 -1.7
203,685 + Shewana3_0170 0.69 -1.8
203,700 + Shewana3_0170 0.71 -0.9
203,700 + Shewana3_0170 0.71 -2.4
203,824 - Shewana3_0170 0.86 -1.5

Or see this region's nucleotide sequence