Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4177

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4176 and Shewana3_4177 overlap by 26 nucleotidesShewana3_4177 and Shewana3_4178 are separated by 550 nucleotides Shewana3_4176: Shewana3_4176 - hypothetical protein (RefSeq), at 42,673 to 43,521 _4176 Shewana3_4177: Shewana3_4177 - CBS domain-containing protein (RefSeq), at 43,496 to 44,170 _4177 Shewana3_4178: Shewana3_4178 - hypothetical protein (RefSeq), at 44,721 to 45,335 _4178 Position (kb) 43 44 45Strain fitness (log2 ratio) -1 0 1at 42.629 kb on + strandat 42.630 kb on + strandat 42.630 kb on + strandat 42.650 kb on - strandat 42.765 kb on - strand, within Shewana3_4176at 43.253 kb on + strand, within Shewana3_4176at 43.253 kb on + strand, within Shewana3_4176at 43.284 kb on + strand, within Shewana3_4176at 43.561 kb on - strandat 43.566 kb on - strand, within Shewana3_4177at 43.821 kb on - strand, within Shewana3_4177at 43.827 kb on - strand, within Shewana3_4177at 43.849 kb on + strand, within Shewana3_4177at 44.367 kb on - strandat 44.621 kb on + strandat 44.623 kb on + strandat 44.692 kb on + strandat 44.718 kb on + strandat 44.858 kb on - strand, within Shewana3_4178at 44.998 kb on - strand, within Shewana3_4178at 45.170 kb on - strand, within Shewana3_4178

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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42,629 + -0.5
42,630 + -1.5
42,630 + +0.7
42,650 - -0.3
42,765 - Shewana3_4176 0.11 -1.6
43,253 + Shewana3_4176 0.68 -0.3
43,253 + Shewana3_4176 0.68 -0.2
43,284 + Shewana3_4176 0.72 +0.3
43,561 - -0.6
43,566 - Shewana3_4177 0.10 +0.3
43,821 - Shewana3_4177 0.48 +1.0
43,827 - Shewana3_4177 0.49 +0.9
43,849 + Shewana3_4177 0.52 +0.3
44,367 - +1.7
44,621 + +0.0
44,623 + +1.2
44,692 + +0.7
44,718 + +0.4
44,858 - Shewana3_4178 0.22 -1.1
44,998 - Shewana3_4178 0.45 +0.4
45,170 - Shewana3_4178 0.73 +0.3

Or see this region's nucleotide sequence