Strain Fitness in Shewanella amazonensis SB2B around Sama_3425

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
4,054,369	+		Sama_3423	0.78	-0.5
4,054,370	-		Sama_3423	0.78	+0.0
4,054,376	-		Sama_3423	0.79	+1.7
4,054,462	+		Sama_3423	0.84	-0.4
4,054,462	+		Sama_3423	0.84	+0.2
4,054,462	+		Sama_3423	0.84	-0.8
4,054,462	+		Sama_3423	0.84	-0.0
4,054,463	-		Sama_3423	0.84	-0.5
4,054,505	-		Sama_3423	0.87	+0.9
4,054,505	-		Sama_3423	0.87	+0.3
4,054,505	-		Sama_3423	0.87	+0.6
4,054,607	+				-0.1
4,054,608	-				-0.3
4,054,608	-				-1.1
4,054,608	-				+0.4
4,054,630	+				-0.7
4,054,631	-				-2.2
4,054,693	+				-0.3
4,054,694	-				-1.0
4,054,694	-				+1.2
4,054,720	+				+0.0
4,054,744	-				+0.5
4,054,756	+				-0.4
4,054,756	+				-0.4
4,054,757	-				+0.8
4,054,757	-				-0.4
4,054,774	+				-2.8
4,054,774	+				-0.7
4,054,774	+				+1.6
4,054,774	+				-0.4
4,054,775	-				-0.5
4,054,775	-				-0.8
4,054,782	-				+0.2
4,054,782	-				-0.8
4,054,782	-				-0.6
4,054,806	-				-0.6
4,054,842	+				-0.8
4,054,842	+				+1.2
4,054,842	+				+0.2
4,054,843	-				+0.6
4,054,856	-				+0.3
4,054,870	-				-0.1
4,054,885	+				+0.2
4,054,885	+				+0.8
4,054,885	+				+0.4
4,054,885	+				-1.3
4,054,886	-				-0.8
4,054,886	-				-1.0
4,054,886	-				+0.2
4,054,886	-				-1.7
4,054,887	+				+0.3
4,054,888	-				-0.8
4,054,905	+				-1.7
4,054,905	+				-0.3
4,054,906	-				+1.2
4,054,906	-				+0.1
4,054,906	-				-1.1
4,054,906	-				+0.2
4,054,906	-				+0.2
4,054,921	+				-0.2
4,054,921	+				-0.8
4,054,921	+				+1.2
4,054,922	-				-0.7
4,054,967	+		Sama_3424	0.15	+0.2
4,054,967	+		Sama_3424	0.15	-0.0
4,054,967	+		Sama_3424	0.15	+0.3
4,054,968	-		Sama_3424	0.15	-0.1
4,054,968	-		Sama_3424	0.15	+0.3
4,054,968	-		Sama_3424	0.15	-0.6
4,054,968	-		Sama_3424	0.15	+0.3
4,055,000	+		Sama_3424	0.25	+0.6
4,055,000	+		Sama_3424	0.25	+0.8
4,055,000	+		Sama_3424	0.25	-0.3
4,055,000	+		Sama_3424	0.25	-0.2
4,055,000	+		Sama_3424	0.25	+1.0
4,055,001	-		Sama_3424	0.26	-1.4
4,055,001	-		Sama_3424	0.26	+2.4
4,055,001	-		Sama_3424	0.26	+0.6
4,055,001	-		Sama_3424	0.26	-0.3
4,055,001	-		Sama_3424	0.26	+0.1
4,055,001	-		Sama_3424	0.26	-0.3
4,055,001	-		Sama_3424	0.26	+1.4
4,055,023	+		Sama_3424	0.33	-0.1
4,055,023	+		Sama_3424	0.33	-0.0
4,055,023	+		Sama_3424	0.33	-0.5
4,055,023	+		Sama_3424	0.33	-0.2
4,055,034	+		Sama_3424	0.36	-0.4
4,055,034	+		Sama_3424	0.36	+0.5
4,055,035	-		Sama_3424	0.37	+0.7
4,055,035	-		Sama_3424	0.37	+0.8
4,055,048	+		Sama_3424	0.41	-2.5
4,055,048	+		Sama_3424	0.41	+0.2
4,055,048	+		Sama_3424	0.41	+0.3
4,055,049	-		Sama_3424	0.41	-0.1
4,055,049	-		Sama_3424	0.41	-0.3
4,055,049	-		Sama_3424	0.41	+0.6
4,055,210	+				-0.4
4,055,211	-				-0.8
4,055,222	+				+0.2
4,055,222	+				+1.6
4,055,222	+				-1.8
4,055,223	-				+1.0
4,055,223	-				-0.2
4,055,223	-				-0.4
4,055,236	+				-1.0
4,055,236	+				+0.4
4,055,236	+				-0.3
4,055,237	-				-0.5
4,055,237	-				-0.4
4,055,237	-				+0.8
4,055,237	-				-0.4
4,055,237	-				-0.9
4,055,237	-				+0.8
4,055,240	+				+1.0
4,055,241	-				-0.1
4,055,302	+				+0.7
4,055,303	-				+0.2
4,055,318	+				-0.6
4,055,318	+				-0.3
4,055,318	+				-0.2
4,055,319	-				-0.8
4,055,319	-				-0.6
4,055,319	-				-0.3
4,055,326	-				+0.3
4,055,326	-				-0.1
4,055,326	-				+0.3
4,055,331	+				+2.2
4,055,331	+				-0.3
4,055,331	+				-0.7
4,055,332	-				-0.8
4,055,343	+				-0.1
4,055,343	+				-0.4
4,055,344	-				-0.0
4,055,367	+				+0.0
4,055,368	-				-0.3
4,055,368	-				-2.6
4,055,392	+		Sama_3425	0.11	-0.2
4,055,392	+		Sama_3425	0.11	-1.7
4,055,393	-		Sama_3425	0.11	-1.3
4,055,393	-		Sama_3425	0.11	-1.7
4,055,394	+		Sama_3425	0.12	-0.4
4,055,394	+		Sama_3425	0.12	+0.4
4,055,394	+		Sama_3425	0.12	-1.2
4,055,394	+		Sama_3425	0.12	-0.6
4,055,394	+		Sama_3425	0.12	-0.4
4,055,394	+		Sama_3425	0.12	-1.3
4,055,395	-		Sama_3425	0.12	-1.0
4,055,395	-		Sama_3425	0.12	-0.4
4,055,395	-		Sama_3425	0.12	-0.8
4,055,395	-		Sama_3425	0.12	+0.3
4,055,395	-		Sama_3425	0.12	-0.3
4,055,395	-		Sama_3425	0.12	-0.4
4,055,425	+		Sama_3425	0.17	+0.2
4,055,425	+		Sama_3425	0.17	+0.0
4,055,425	+		Sama_3425	0.17	-0.1
4,055,425	+		Sama_3425	0.17	+0.7
4,055,426	-		Sama_3425	0.18	-0.7
4,055,426	-		Sama_3425	0.18	+0.0
4,055,426	-		Sama_3425	0.18	+0.2
4,055,426	-		Sama_3425	0.18	+0.4
4,055,426	-		Sama_3425	0.18	+0.0
4,055,433	+		Sama_3425	0.19	+0.7
4,055,433	+		Sama_3425	0.19	-0.3
4,055,548	+		Sama_3425	0.40	-0.1
4,055,555	+		Sama_3425	0.42	-0.0
4,055,556	-		Sama_3425	0.42	-1.3
4,055,556	-		Sama_3425	0.42	-0.8
4,055,556	-		Sama_3425	0.42	-0.2
4,055,556	-		Sama_3425	0.42	+0.3
4,055,556	-		Sama_3425	0.42	+0.4
4,055,596	-		Sama_3425	0.49	-1.4
4,055,663	+		Sama_3425	0.62	-0.8
4,055,663	+		Sama_3425	0.62	-1.2
4,055,663	+		Sama_3425	0.62	+1.9
4,055,663	+		Sama_3425	0.62	-0.1
4,055,663	+		Sama_3425	0.62	-0.0
4,055,663	+		Sama_3425	0.62	-0.2
4,055,663	+		Sama_3425	0.62	-0.7
4,055,663	+		Sama_3425	0.62	-0.5
4,055,663	+		Sama_3425	0.62	+0.7
4,055,663	+		Sama_3425	0.62	-1.8
4,055,664	-		Sama_3425	0.62	+0.6
4,055,664	-		Sama_3425	0.62	-1.4
4,055,664	-		Sama_3425	0.62	-0.0
4,055,664	-		Sama_3425	0.62	+0.3
4,055,664	-		Sama_3425	0.62	+0.4
4,055,667	+		Sama_3425	0.62	-0.4
4,055,667	+		Sama_3425	0.62	+0.6
4,055,668	-		Sama_3425	0.63	+0.4
4,055,668	-		Sama_3425	0.63	+0.9
4,055,668	-		Sama_3425	0.63	+0.5
4,055,668	-		Sama_3425	0.63	+0.4
4,055,753	+		Sama_3425	0.78	-1.0
4,055,753	+		Sama_3425	0.78	+0.4
4,055,753	+		Sama_3425	0.78	-1.2
4,055,753	+		Sama_3425	0.78	+1.0
4,055,799	+		Sama_3425	0.87	-1.0
4,055,799	+		Sama_3425	0.87	-0.2
4,055,800	-		Sama_3425	0.87	+0.1
4,055,821	-				+0.4
4,055,821	-				-0.0
4,055,892	+				+0.5
4,055,952	-				-1.2
4,055,964	+				-0.1
4,055,965	-				-2.3
4,056,036	-				-2.7
4,056,044	+				-2.2
4,056,045	-				-2.2
4,056,056	+				-3.7
4,056,057	-				-2.8
4,056,158	+		Sama_3426	0.16	-2.4
4,056,159	-		Sama_3426	0.16	-2.9
4,056,170	+		Sama_3426	0.17	-0.4
4,056,171	-		Sama_3426	0.17	-2.8
4,056,171	-		Sama_3426	0.17	-1.8
4,056,186	-		Sama_3426	0.18	-1.4
4,056,447	-		Sama_3426	0.43	-2.2
4,056,447	-		Sama_3426	0.43	-3.7
4,056,655	+		Sama_3426	0.63	-3.5
4,056,656	-		Sama_3426	0.63	-2.3
4,056,677	+		Sama_3426	0.65	-1.8
4,056,677	+		Sama_3426	0.65	-1.4
4,056,677	+		Sama_3426	0.65	-2.2
4,056,678	-		Sama_3426	0.65	-2.0
4,056,678	-		Sama_3426	0.65	-2.6
4,056,678	-		Sama_3426	0.65	-1.8
4,056,719	+		Sama_3426	0.69	+0.7
4,056,719	+		Sama_3426	0.69	-2.8
4,056,719	+		Sama_3426	0.69	-2.6
4,056,719	+		Sama_3426	0.69	-2.2
4,056,841	-		Sama_3426	0.81	-1.8