Strain Fitness in Shewanella amazonensis SB2B around Sama_2890

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
3,431,186	+		Sama_2889	0.51	-3.0
3,431,187	-		Sama_2889	0.51	-2.8
3,431,187	-		Sama_2889	0.51	-1.9
3,431,232	+		Sama_2889	0.53	-2.6
3,431,233	-		Sama_2889	0.53	-2.7
3,431,292	+		Sama_2889	0.57	-1.7
3,431,293	-		Sama_2889	0.57	-2.6
3,431,293	-		Sama_2889	0.57	-2.6
3,431,295	+		Sama_2889	0.57	-0.7
3,431,295	+		Sama_2889	0.57	-2.5
3,431,296	-		Sama_2889	0.57	-2.7
3,431,340	-		Sama_2889	0.60	-1.6
3,431,395	-		Sama_2889	0.63	-2.6
3,431,410	-		Sama_2889	0.64	-1.7
3,431,410	-		Sama_2889	0.64	-2.8
3,431,427	-		Sama_2889	0.64	-1.7
3,431,518	+		Sama_2889	0.70	-2.1
3,431,518	+		Sama_2889	0.70	-2.8
3,431,518	+		Sama_2889	0.70	-2.6
3,431,518	+		Sama_2889	0.70	-2.7
3,431,519	-		Sama_2889	0.70	-3.5
3,431,519	-		Sama_2889	0.70	-2.6
3,431,519	-		Sama_2889	0.70	-2.1
3,431,519	-		Sama_2889	0.70	-0.9
3,431,519	-		Sama_2889	0.70	-2.5
3,431,519	-		Sama_2889	0.70	-4.2
3,431,519	-		Sama_2889	0.70	-3.4
3,431,519	-		Sama_2889	0.70	-0.7
3,431,519	-		Sama_2889	0.70	-2.3
3,431,538	+		Sama_2889	0.71	-1.1
3,431,604	+		Sama_2889	0.75	-2.1
3,431,605	-		Sama_2889	0.75	-3.7
3,431,676	-		Sama_2889	0.79	-3.8
3,431,754	+		Sama_2889	0.83	-2.1
3,431,754	+		Sama_2889	0.83	-1.9
3,431,773	-		Sama_2889	0.84	-1.1
3,431,773	-		Sama_2889	0.84	-2.1
3,431,800	+		Sama_2889	0.86	-1.5
3,431,801	-		Sama_2889	0.86	-4.0
3,431,801	-		Sama_2889	0.86	-2.6
3,431,824	-		Sama_2889	0.87	-2.6
3,431,936	+				-1.5
3,431,937	-				+0.4
3,431,942	-				-2.8
3,432,013	+				-2.6
3,432,014	-				-3.5
3,432,022	+				-1.7
3,432,022	+				-1.9
3,432,023	-				-1.5
3,432,023	-				-4.2
3,432,023	-				-2.9
3,432,025	+				-2.5
3,432,026	-				-0.7
3,432,032	+				-2.1
3,432,032	+				-3.1
3,432,033	-				-3.8
3,432,054	+				-2.3
3,432,063	-				-0.9
3,432,097	+				-1.1
3,432,098	-				+0.3
3,432,098	-				+0.6
3,432,098	-				-1.9
3,432,098	-				-0.6
3,432,124	+				-1.5
3,432,124	+				-0.7
3,432,269	-		Sama_2890	0.11	-3.5
3,432,269	-		Sama_2890	0.11	-2.8
3,432,284	-		Sama_2890	0.12	-2.2
3,432,413	+		Sama_2890	0.21	-2.3
3,432,413	+		Sama_2890	0.21	-0.4
3,432,413	+		Sama_2890	0.21	-1.9
3,432,414	-		Sama_2890	0.21	-1.9
3,432,414	-		Sama_2890	0.21	-0.1
3,432,458	-		Sama_2890	0.24	-4.2
3,432,474	+		Sama_2890	0.25	-2.6
3,432,475	-		Sama_2890	0.25	-2.6
3,432,475	-		Sama_2890	0.25	-3.4
3,432,475	-		Sama_2890	0.25	-0.1
3,432,567	-		Sama_2890	0.32	-1.7
3,432,670	+		Sama_2890	0.39	-1.1
3,432,671	-		Sama_2890	0.39	-2.9
3,432,671	-		Sama_2890	0.39	-2.7
3,432,783	+		Sama_2890	0.47	-3.0
3,432,784	-		Sama_2890	0.47	-0.1
3,432,784	-		Sama_2890	0.47	-0.5
3,432,784	-		Sama_2890	0.47	-1.7
3,432,870	+		Sama_2890	0.53	-0.1
3,432,871	-		Sama_2890	0.54	-1.9
3,432,952	+		Sama_2890	0.59	-0.1
3,432,952	+		Sama_2890	0.59	-1.9
3,432,953	-		Sama_2890	0.59	-2.1
3,432,953	-		Sama_2890	0.59	-2.1
3,432,975	+		Sama_2890	0.61	-2.0
3,432,976	-		Sama_2890	0.61	-0.1
3,432,976	-		Sama_2890	0.61	-1.7
3,433,075	+		Sama_2890	0.68	-3.0
3,433,076	-		Sama_2890	0.68	-3.9
3,433,076	-		Sama_2890	0.68	-2.1
3,433,076	-		Sama_2890	0.68	-1.5
3,433,076	-		Sama_2890	0.68	-0.1
3,433,166	-		Sama_2890	0.74	-0.1
3,433,166	-		Sama_2890	0.74	-1.1
3,433,176	+		Sama_2890	0.75	-1.9
3,433,176	+		Sama_2890	0.75	-2.3
3,433,176	+		Sama_2890	0.75	-2.3
3,433,177	-		Sama_2890	0.75	-3.0
3,433,177	-		Sama_2890	0.75	-1.7
3,433,177	-		Sama_2890	0.75	-1.7
3,433,177	-		Sama_2890	0.75	-2.1
3,433,233	+		Sama_2890	0.79	-2.1
3,433,234	-		Sama_2890	0.79	-1.9
3,433,245	-		Sama_2890	0.80	-2.7
3,433,290	-		Sama_2890	0.83	-3.7
3,433,324	+		Sama_2890	0.86	-3.2
3,433,331	+		Sama_2890	0.86	-1.5
3,433,331	+		Sama_2890	0.86	-2.5
3,433,450	+				-2.1
3,433,451	-				-2.8
3,433,463	-				-1.9
3,433,463	-				-1.5
3,433,463	-				-2.8
3,433,463	-				-2.3
3,433,463	-				-4.5
3,433,482	+				-2.5
3,433,493	-				-1.7
3,433,504	+				-0.7
3,433,505	-				-3.2
3,433,519	+				+0.4
3,433,519	+				-3.4
3,433,520	-				-1.5
3,433,520	-				-1.5
3,433,520	-				-1.5
3,433,520	-				-3.2
3,433,520	-				-3.1
3,433,679	+		Sama_2891	0.17	-0.1
3,433,680	-		Sama_2891	0.17	-3.3
3,433,744	-		Sama_2891	0.24	-1.7
3,433,744	-		Sama_2891	0.24	-3.0
3,433,744	-		Sama_2891	0.24	-2.8
3,433,808	+		Sama_2891	0.31	-2.7
3,433,809	-		Sama_2891	0.31	-3.1
3,433,809	-		Sama_2891	0.31	+0.9
3,433,809	-		Sama_2891	0.31	-2.1
3,433,809	-		Sama_2891	0.31	-1.9
3,433,809	-		Sama_2891	0.31	-2.8
3,433,819	+		Sama_2891	0.32	-3.1
3,433,819	+		Sama_2891	0.32	-2.6
3,433,819	+		Sama_2891	0.32	-0.7
3,433,819	+		Sama_2891	0.32	-0.7
3,433,819	+		Sama_2891	0.32	-2.5
3,433,820	-		Sama_2891	0.32	-1.9
3,433,820	-		Sama_2891	0.32	-2.7
3,433,839	-		Sama_2891	0.35	-3.9
3,433,839	-		Sama_2891	0.35	-3.5
3,433,844	+		Sama_2891	0.35	-1.7
3,433,844	+		Sama_2891	0.35	-1.7
3,433,844	+		Sama_2891	0.35	-1.5
3,433,845	-		Sama_2891	0.35	-3.1
3,433,845	-		Sama_2891	0.35	-2.7
3,433,845	-		Sama_2891	0.35	-3.2
3,433,845	-		Sama_2891	0.35	-2.7
3,433,923	-		Sama_2891	0.44	-1.5
3,433,923	-		Sama_2891	0.44	-3.5
3,433,923	-		Sama_2891	0.44	-3.5
3,433,988	+		Sama_2891	0.51	-2.8
3,433,989	-		Sama_2891	0.51	-4.5
3,434,058	-		Sama_2891	0.59	-1.6
3,434,058	-		Sama_2891	0.59	-3.8
3,434,058	-		Sama_2891	0.59	-1.7
3,434,058	-		Sama_2891	0.59	-0.7
3,434,058	-		Sama_2891	0.59	-3.8
3,434,186	+		Sama_2891	0.73	-3.8
3,434,186	+		Sama_2891	0.73	-3.5
3,434,334	-		Sama_2891	0.89	-3.2
3,434,334	-		Sama_2891	0.89	-0.9
3,434,416	+				-2.5
3,434,417	-				-2.8
3,434,417	-				-0.7
3,434,451	+				-5.6
3,434,452	-				-3.7
3,434,452	-				-4.3
3,434,452	-				-3.5
3,434,452	-				-2.3
3,434,452	-				-1.6
3,434,453	+				-2.7
3,434,453	+				-2.1
3,434,453	+				-3.3
3,434,454	-				+0.5
3,434,454	-				-1.5
3,434,454	-				-0.6