Strain Fitness in Shewanella amazonensis SB2B around Sama_2858

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
3,395,550	-				-0.6
3,395,550	-				+0.9
3,395,559	+				-0.6
3,395,559	+				+0.8
3,395,559	+				+0.0
3,395,605	+				-0.3
3,395,605	+				+0.9
3,395,605	+				+0.0
3,395,605	+				+0.6
3,395,605	+				+0.8
3,395,605	+				+0.3
3,395,606	-				-0.6
3,395,606	-				+0.3
3,395,606	-				-0.3
3,395,606	-				-0.7
3,395,606	-				-2.1
3,395,613	+				-0.1
3,395,613	+				+0.1
3,395,613	+				-0.1
3,395,613	+				-0.9
3,395,614	-				-1.0
3,395,614	-				+0.6
3,395,614	-				-1.0
3,395,621	-				-0.1
3,395,636	+				-0.9
3,395,676	+				-0.1
3,395,676	+				-1.5
3,395,677	-				-1.0
3,395,677	-				+2.7
3,395,677	-				-1.5
3,395,677	-				-0.9
3,395,732	+				-2.7
3,395,820	+		Sama_2857	0.18	+0.9
3,395,820	+		Sama_2857	0.18	-0.5
3,395,820	+		Sama_2857	0.18	+1.1
3,395,821	-		Sama_2857	0.18	+0.8
3,395,821	-		Sama_2857	0.18	+2.1
3,395,821	-		Sama_2857	0.18	-0.1
3,395,911	-		Sama_2857	0.29	-0.1
3,395,960	+		Sama_2857	0.36	+0.3
3,395,960	+		Sama_2857	0.36	-1.0
3,395,961	-		Sama_2857	0.36	-0.9
3,395,961	-		Sama_2857	0.36	-0.3
3,395,961	-		Sama_2857	0.36	-0.5
3,395,961	-		Sama_2857	0.36	-0.0
3,396,008	+		Sama_2857	0.42	-0.5
3,396,008	+		Sama_2857	0.42	-1.6
3,396,008	+		Sama_2857	0.42	+1.1
3,396,009	-		Sama_2857	0.42	+1.5
3,396,011	+		Sama_2857	0.42	-0.2
3,396,011	+		Sama_2857	0.42	+0.0
3,396,011	+		Sama_2857	0.42	+0.4
3,396,011	+		Sama_2857	0.42	-1.7
3,396,012	-		Sama_2857	0.42	-0.4
3,396,012	-		Sama_2857	0.42	+1.3
3,396,012	-		Sama_2857	0.42	+1.4
3,396,012	-		Sama_2857	0.42	+0.6
3,396,024	+		Sama_2857	0.44	-0.5
3,396,025	-		Sama_2857	0.44	-0.1
3,396,050	+		Sama_2857	0.47	-1.1
3,396,050	+		Sama_2857	0.47	-0.9
3,396,058	-		Sama_2857	0.48	+0.3
3,396,058	-		Sama_2857	0.48	+0.2
3,396,058	-		Sama_2857	0.48	+0.9
3,396,123	+		Sama_2857	0.56	-0.4
3,396,123	+		Sama_2857	0.56	-1.0
3,396,216	+		Sama_2857	0.68	+0.4
3,396,216	+		Sama_2857	0.68	-0.2
3,396,216	+		Sama_2857	0.68	+0.5
3,396,217	-		Sama_2857	0.68	-0.4
3,396,217	-		Sama_2857	0.68	+0.6
3,396,217	-		Sama_2857	0.68	-0.7
3,396,217	-		Sama_2857	0.68	+0.4
3,396,217	-		Sama_2857	0.68	+0.1
3,396,217	-		Sama_2857	0.68	+0.7
3,396,273	+		Sama_2857	0.75	-0.3
3,396,273	+		Sama_2857	0.75	+0.0
3,396,273	+		Sama_2857	0.75	+0.7
3,396,273	+		Sama_2857	0.75	-0.8
3,396,273	+		Sama_2857	0.75	+1.5
3,396,273	+		Sama_2857	0.75	+1.1
3,396,273	+		Sama_2857	0.75	+0.3
3,396,273	+		Sama_2857	0.75	-0.5
3,396,273	+		Sama_2857	0.75	-0.0
3,396,273	+		Sama_2857	0.75	-0.3
3,396,273	+		Sama_2857	0.75	+0.4
3,396,274	-		Sama_2857	0.76	+0.1
3,396,274	-		Sama_2857	0.76	-0.5
3,396,274	-		Sama_2857	0.76	-0.6
3,396,274	-		Sama_2857	0.76	-0.9
3,396,274	-		Sama_2857	0.76	-0.3
3,396,274	-		Sama_2857	0.76	-0.7
3,396,274	-		Sama_2857	0.76	-0.5
3,396,274	-		Sama_2857	0.76	+0.5
3,396,274	-		Sama_2857	0.76	+0.5
3,396,274	-		Sama_2857	0.76	-0.0
3,396,274	-		Sama_2857	0.76	-0.9
3,396,275	+		Sama_2857	0.76	-0.1
3,396,276	-		Sama_2857	0.76	+1.5
3,396,276	-		Sama_2857	0.76	+0.8
3,396,276	-		Sama_2857	0.76	-1.1
3,396,276	-		Sama_2857	0.76	-0.4
3,396,276	-		Sama_2857	0.76	+0.9
3,396,302	+		Sama_2857	0.79	+1.1
3,396,323	+		Sama_2857	0.82	-0.2
3,396,324	-		Sama_2857	0.82	+0.9
3,396,324	-		Sama_2857	0.82	+1.1
3,396,324	-		Sama_2857	0.82	-0.1
3,396,394	-				+0.3
3,396,394	-				-0.6
3,396,470	+				-0.9
3,396,470	+				+0.5
3,396,470	+				-0.3
3,396,471	-				+1.9
3,396,478	+				-0.7
3,396,478	+				-0.3
3,396,478	+				-0.1
3,396,478	+				+0.1
3,396,479	-				+0.1
3,396,479	-				+0.7
3,396,479	-				-0.9
3,396,479	-				-0.5
3,396,495	+				-0.8
3,396,495	+				+0.0
3,396,496	-				+1.4
3,396,525	-		Sama_2858	0.16	+0.7
3,396,525	-		Sama_2858	0.16	+0.5
3,396,525	-		Sama_2858	0.16	-0.2
3,396,558	+		Sama_2858	0.25	-0.4
3,396,559	-		Sama_2858	0.25	+0.5
3,396,559	-		Sama_2858	0.25	-0.5
3,396,571	+		Sama_2858	0.28	+2.2
3,396,572	-		Sama_2858	0.28	+1.7
3,396,586	+		Sama_2858	0.32	-0.5
3,396,586	+		Sama_2858	0.32	+0.3
3,396,586	+		Sama_2858	0.32	+0.5
3,396,586	+		Sama_2858	0.32	-0.1
3,396,586	+		Sama_2858	0.32	-0.0
3,396,586	+		Sama_2858	0.32	-0.7
3,396,586	+		Sama_2858	0.32	+0.3
3,396,587	-		Sama_2858	0.32	-0.1
3,396,587	-		Sama_2858	0.32	+0.5
3,396,587	-		Sama_2858	0.32	-0.3
3,396,587	-		Sama_2858	0.32	+0.1
3,396,587	-		Sama_2858	0.32	-0.5
3,396,587	-		Sama_2858	0.32	-1.0
3,396,587	-		Sama_2858	0.32	-1.1
3,396,599	+		Sama_2858	0.35	-0.5
3,396,599	+		Sama_2858	0.35	-1.5
3,396,600	-		Sama_2858	0.35	-1.6
3,396,600	-		Sama_2858	0.35	+0.0
3,396,638	+		Sama_2858	0.45	+1.1
3,396,638	+		Sama_2858	0.45	-1.2
3,396,639	-		Sama_2858	0.45	-0.1
3,396,639	-		Sama_2858	0.45	-0.1
3,396,642	-		Sama_2858	0.46	-0.5
3,396,642	-		Sama_2858	0.46	+0.6
3,396,837	+				-0.5
3,396,837	+				-0.1
3,396,837	+				-2.1
3,396,924	+		Sama_2859	0.20	+0.4
3,396,925	-		Sama_2859	0.21	+0.9
3,396,925	-		Sama_2859	0.21	+0.3
3,396,925	-		Sama_2859	0.21	+0.3
3,396,934	+		Sama_2859	0.23	+0.1
3,396,934	+		Sama_2859	0.23	+1.4
3,396,934	+		Sama_2859	0.23	+0.2
3,396,934	+		Sama_2859	0.23	-0.1
3,396,934	+		Sama_2859	0.23	+1.0
3,396,934	+		Sama_2859	0.23	+0.2
3,396,935	-		Sama_2859	0.24	-1.7
3,396,935	-		Sama_2859	0.24	-0.7
3,396,935	-		Sama_2859	0.24	+0.6
3,396,935	-		Sama_2859	0.24	+0.2
3,396,935	-		Sama_2859	0.24	+0.4
3,396,935	-		Sama_2859	0.24	+0.3
3,396,999	+		Sama_2859	0.42	+0.4
3,396,999	+		Sama_2859	0.42	-2.9
3,396,999	+		Sama_2859	0.42	+0.3
3,397,000	-		Sama_2859	0.43	-0.1
3,397,024	+		Sama_2859	0.50	+0.2
3,397,075	+		Sama_2859	0.65	+0.6
3,397,076	-		Sama_2859	0.65	-0.1
3,397,107	+		Sama_2859	0.74	-0.1
3,397,107	+		Sama_2859	0.74	+0.7
3,397,108	-		Sama_2859	0.74	-0.2
3,397,108	-		Sama_2859	0.74	+0.7
3,397,108	-		Sama_2859	0.74	-0.3
3,397,117	-		Sama_2859	0.77	-1.1
3,397,117	-		Sama_2859	0.77	+0.3
3,397,117	-		Sama_2859	0.77	-0.1
3,397,119	+		Sama_2859	0.77	-0.0
3,397,119	+		Sama_2859	0.77	+0.9
3,397,119	+		Sama_2859	0.77	+0.9
3,397,119	+		Sama_2859	0.77	-0.7
3,397,119	+		Sama_2859	0.77	-0.7
3,397,120	-		Sama_2859	0.78	-1.1
3,397,222	+				+0.0
3,397,223	-				-1.5
3,397,287	-				+1.4
3,397,297	-				-0.4
3,397,297	-				-0.0
3,397,297	-				+0.2
3,397,297	-				-0.6
3,397,297	-				-1.2
3,397,323	+				-0.2
3,397,323	+				-0.4
3,397,323	+				-1.0
3,397,367	-				-0.4
3,397,390	-				+0.9
3,397,420	-				-0.2
3,397,444	-				+0.3
3,397,444	-				+0.5
3,397,444	-				-0.7
3,397,449	+				-0.0
3,397,450	-				+0.3
3,397,561	+				-0.8
3,397,562	-				-1.9
3,397,573	-		Sama_2860	0.11	+0.1
3,397,573	-		Sama_2860	0.11	+0.1
3,397,573	-		Sama_2860	0.11	-0.1
3,397,573	-		Sama_2860	0.11	-0.4
3,397,713	-		Sama_2860	0.21	-1.0
3,397,724	+		Sama_2860	0.22	-0.4
3,397,724	+		Sama_2860	0.22	-0.6
3,397,724	+		Sama_2860	0.22	+0.7
3,397,724	+		Sama_2860	0.22	+0.4
3,397,725	-		Sama_2860	0.22	+1.3
3,397,725	-		Sama_2860	0.22	-0.1
3,397,725	-		Sama_2860	0.22	+0.2
3,397,728	+		Sama_2860	0.23	-0.0
3,397,728	+		Sama_2860	0.23	-1.1
3,397,728	+		Sama_2860	0.23	-1.3
3,397,728	+		Sama_2860	0.23	+0.9
3,397,729	-		Sama_2860	0.23	+0.2
3,397,729	-		Sama_2860	0.23	+0.4
3,397,743	+		Sama_2860	0.24	+0.2
3,397,743	+		Sama_2860	0.24	-0.3
3,397,743	+		Sama_2860	0.24	-0.5
3,397,744	-		Sama_2860	0.24	+0.9
3,397,744	-		Sama_2860	0.24	+0.4
3,397,744	-		Sama_2860	0.24	+0.9
3,397,821	+		Sama_2860	0.30	-0.2