Strain Fitness in Shewanella amazonensis SB2B around Sama_2776

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
3,317,566	+				+1.3
3,317,567	-				+1.9
3,317,612	-		Sama_2775	0.12	+0.9
3,317,683	+		Sama_2775	0.20	+0.6
3,317,683	+		Sama_2775	0.20	+0.4
3,317,683	+		Sama_2775	0.20	-0.3
3,317,847	+		Sama_2775	0.37	+1.2
3,317,847	+		Sama_2775	0.37	+1.1
3,317,847	+		Sama_2775	0.37	+1.1
3,317,848	-		Sama_2775	0.37	+1.8
3,317,848	-		Sama_2775	0.37	+3.4
3,317,848	-		Sama_2775	0.37	+0.7
3,317,848	-		Sama_2775	0.37	+0.7
3,317,848	-		Sama_2775	0.37	-0.8
3,317,848	-		Sama_2775	0.37	+1.2
3,317,848	-		Sama_2775	0.37	+0.8
3,317,860	+		Sama_2775	0.38	+0.6
3,317,860	+		Sama_2775	0.38	+0.8
3,317,861	-		Sama_2775	0.39	+1.2
3,317,861	-		Sama_2775	0.39	+0.7
3,317,861	-		Sama_2775	0.39	+2.3
3,317,929	+		Sama_2775	0.46	+0.3
3,317,929	+		Sama_2775	0.46	+2.1
3,317,929	+		Sama_2775	0.46	+0.6
3,317,930	-		Sama_2775	0.46	+0.6
3,317,930	-		Sama_2775	0.46	+0.6
3,317,930	-		Sama_2775	0.46	+0.8
3,317,930	-		Sama_2775	0.46	+3.1
3,317,972	+		Sama_2775	0.50	-0.0
3,317,973	-		Sama_2775	0.50	+1.1
3,318,027	+		Sama_2775	0.56	+1.0
3,318,027	+		Sama_2775	0.56	+1.6
3,318,051	+		Sama_2775	0.59	+1.2
3,318,093	+		Sama_2775	0.63	+1.4
3,318,093	+		Sama_2775	0.63	+1.2
3,318,093	+		Sama_2775	0.63	+0.8
3,318,093	+		Sama_2775	0.63	+2.3
3,318,093	+		Sama_2775	0.63	+0.9
3,318,093	+		Sama_2775	0.63	+1.3
3,318,093	+		Sama_2775	0.63	+1.3
3,318,093	+		Sama_2775	0.63	+0.9
3,318,093	+		Sama_2775	0.63	+1.2
3,318,094	-		Sama_2775	0.63	+0.5
3,318,114	+		Sama_2775	0.65	+0.5
3,318,289	-		Sama_2775	0.84	+1.0
3,318,300	+		Sama_2775	0.85	+2.3
3,318,300	+		Sama_2775	0.85	+0.8
3,318,301	-		Sama_2775	0.85	+0.4
3,318,343	-		Sama_2775	0.90	+0.6
3,318,419	+				+0.9
3,318,419	+				-0.4
3,318,420	-				+0.6
3,318,485	+				+0.8
3,318,485	+				-0.4
3,318,485	+				+0.1
3,318,501	+				+0.5
3,318,501	+				-0.6
3,318,502	-				-0.3
3,318,502	-				+0.2
3,318,515	+				+0.5
3,318,522	+				+0.1
3,318,522	+				+1.1
3,318,522	+				-0.2
3,318,523	-				+0.2
3,318,525	+				+1.1
3,318,525	+				+0.5
3,318,525	+				+0.7
3,318,525	+				+0.2
3,318,525	+				-2.2
3,318,526	-				+0.6
3,318,550	-				+1.1
3,318,624	-				-0.3
3,318,624	-				+2.4
3,318,624	-				-0.0
3,318,655	-		Sama_2776	0.11	+1.4
3,318,681	-		Sama_2776	0.13	-0.4
3,318,699	+		Sama_2776	0.15	+0.3
3,318,699	+		Sama_2776	0.15	+0.7
3,318,699	+		Sama_2776	0.15	-0.1
3,318,700	-		Sama_2776	0.15	-0.2
3,318,756	+		Sama_2776	0.21	+0.8
3,318,756	+		Sama_2776	0.21	+1.5
3,318,756	+		Sama_2776	0.21	-0.7
3,318,756	+		Sama_2776	0.21	-0.0
3,318,757	-		Sama_2776	0.21	+1.0
3,318,757	-		Sama_2776	0.21	-1.6
3,318,762	-		Sama_2776	0.21	-0.4
3,318,762	-		Sama_2776	0.21	+0.7
3,318,831	+		Sama_2776	0.28	+0.5
3,318,831	+		Sama_2776	0.28	+0.5
3,318,831	+		Sama_2776	0.28	-0.1
3,318,831	+		Sama_2776	0.28	+1.4
3,318,831	+		Sama_2776	0.28	+0.5
3,318,832	-		Sama_2776	0.28	+0.2
3,318,832	-		Sama_2776	0.28	-0.8
3,318,833	+		Sama_2776	0.28	+0.4
3,318,834	-		Sama_2776	0.28	+0.7
3,318,893	-		Sama_2776	0.34	-0.9
3,318,908	-		Sama_2776	0.35	-0.4
3,318,908	-		Sama_2776	0.35	-0.4
3,318,908	-		Sama_2776	0.35	-0.4
3,318,908	-		Sama_2776	0.35	+1.1
3,318,908	-		Sama_2776	0.35	-0.3
3,318,908	-		Sama_2776	0.35	+0.9
3,318,908	-		Sama_2776	0.35	+1.1
3,318,924	+		Sama_2776	0.37	-0.4
3,318,925	-		Sama_2776	0.37	-0.0
3,318,925	-		Sama_2776	0.37	-0.3
3,318,925	-		Sama_2776	0.37	-0.2
3,318,925	-		Sama_2776	0.37	+0.4
3,318,947	-		Sama_2776	0.39	+0.6
3,318,975	+		Sama_2776	0.42	-0.6
3,318,975	+		Sama_2776	0.42	+0.1
3,318,975	+		Sama_2776	0.42	+0.1
3,318,975	+		Sama_2776	0.42	+1.6
3,318,975	+		Sama_2776	0.42	+0.1
3,318,975	+		Sama_2776	0.42	+0.3
3,318,975	+		Sama_2776	0.42	+0.4
3,318,976	-		Sama_2776	0.42	-0.2
3,318,976	-		Sama_2776	0.42	+0.5
3,319,063	-		Sama_2776	0.50	+0.5
3,319,063	-		Sama_2776	0.50	+0.4
3,319,063	-		Sama_2776	0.50	-0.2
3,319,064	+		Sama_2776	0.50	+0.4
3,319,064	+		Sama_2776	0.50	+0.3
3,319,064	+		Sama_2776	0.50	+0.0
3,319,064	+		Sama_2776	0.50	-1.0
3,319,064	+		Sama_2776	0.50	+0.1
3,319,064	+		Sama_2776	0.50	-2.0
3,319,065	-		Sama_2776	0.50	-0.2
3,319,065	-		Sama_2776	0.50	-0.4
3,319,065	-		Sama_2776	0.50	-0.2
3,319,065	-		Sama_2776	0.50	-0.4
3,319,067	-		Sama_2776	0.50	-1.3
3,319,104	+		Sama_2776	0.54	+0.9
3,319,104	+		Sama_2776	0.54	-0.1
3,319,104	+		Sama_2776	0.54	+0.2
3,319,104	+		Sama_2776	0.54	-0.4
3,319,104	+		Sama_2776	0.54	+0.4
3,319,104	+		Sama_2776	0.54	+0.2
3,319,105	-		Sama_2776	0.54	-0.4
3,319,105	-		Sama_2776	0.54	-1.1
3,319,161	+		Sama_2776	0.60	+0.1
3,319,161	+		Sama_2776	0.60	+0.2
3,319,162	-		Sama_2776	0.60	-1.2
3,319,237	-		Sama_2776	0.67	+0.5
3,319,261	+		Sama_2776	0.69	-2.5
3,319,262	-		Sama_2776	0.69	-0.2
3,319,262	-		Sama_2776	0.69	+1.4
3,319,262	-		Sama_2776	0.69	+0.3
3,319,262	-		Sama_2776	0.69	-1.6
3,319,272	+		Sama_2776	0.70	-0.3
3,319,273	-		Sama_2776	0.70	+0.8
3,319,333	-		Sama_2776	0.76	+1.2
3,319,368	+		Sama_2776	0.79	-0.1
3,319,369	-		Sama_2776	0.80	-0.5
3,319,369	-		Sama_2776	0.80	-2.9
3,319,369	-		Sama_2776	0.80	-0.6
3,319,369	-		Sama_2776	0.80	+0.8
3,319,397	-		Sama_2776	0.82	-0.2
3,319,397	-		Sama_2776	0.82	+0.8
3,319,426	+		Sama_2776	0.85	-0.8
3,319,427	-		Sama_2776	0.85	+0.3
3,319,427	-		Sama_2776	0.85	+1.0
3,319,427	-		Sama_2776	0.85	+1.7
3,319,454	+		Sama_2776	0.88	+0.4
3,319,455	-		Sama_2776	0.88	+1.6
3,319,455	-		Sama_2776	0.88	-0.8
3,319,455	-		Sama_2776	0.88	+0.2
3,319,460	-		Sama_2776	0.88	+0.5
3,319,460	-		Sama_2776	0.88	-0.4
3,319,460	-		Sama_2776	0.88	-2.2
3,319,561	-				+2.0
3,319,579	-				-0.3
3,319,583	+				-2.5
3,319,607	+				+0.8
3,319,608	-				+0.7
3,319,608	-				-0.8
3,319,608	-				+0.2
3,319,711	+				+0.8
3,319,711	+				-0.4
3,319,734	-				-0.2
3,319,782	+				+0.2
3,319,911	+		Sama_2777	0.16	-2.0
3,319,911	+		Sama_2777	0.16	+0.8
3,319,912	-		Sama_2777	0.16	-0.1
3,319,912	-		Sama_2777	0.16	-0.1
3,319,970	+		Sama_2777	0.21	-0.3
3,320,033	+		Sama_2777	0.26	+0.8
3,320,033	+		Sama_2777	0.26	+0.6
3,320,056	+		Sama_2777	0.28	-0.0
3,320,057	-		Sama_2777	0.28	+0.1
3,320,057	-		Sama_2777	0.28	+2.3
3,320,221	+		Sama_2777	0.41	+0.2
3,320,221	+		Sama_2777	0.41	-0.2
3,320,221	+		Sama_2777	0.41	+0.0
3,320,222	-		Sama_2777	0.41	+0.1
3,320,222	-		Sama_2777	0.41	+0.6
3,320,222	-		Sama_2777	0.41	+1.0
3,320,222	-		Sama_2777	0.41	+0.8
3,320,361	+		Sama_2777	0.53	-1.5
3,320,362	-		Sama_2777	0.53	-0.6
3,320,362	-		Sama_2777	0.53	+0.1
3,320,362	-		Sama_2777	0.53	+0.2
3,320,385	+		Sama_2777	0.55	-0.9
3,320,385	+		Sama_2777	0.55	+0.1
3,320,385	+		Sama_2777	0.55	-0.1
3,320,386	-		Sama_2777	0.55	+0.5
3,320,386	-		Sama_2777	0.55	-1.2
3,320,386	-		Sama_2777	0.55	+0.7
3,320,386	-		Sama_2777	0.55	+0.2
3,320,386	-		Sama_2777	0.55	+0.1
3,320,386	-		Sama_2777	0.55	+0.4
3,320,412	+		Sama_2777	0.57	-0.4
3,320,413	-		Sama_2777	0.57	+0.5
3,320,421	+		Sama_2777	0.58	-0.1
3,320,422	-		Sama_2777	0.58	-0.1
3,320,442	-		Sama_2777	0.59	+0.2
3,320,471	-		Sama_2777	0.62	-0.8
3,320,486	+		Sama_2777	0.63	-1.8
3,320,540	+		Sama_2777	0.67	+0.7
3,320,580	-		Sama_2777	0.70	+0.6
3,320,580	-		Sama_2777	0.70	-1.5