Strain Fitness in Shewanella amazonensis SB2B around Sama_2683

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
3,212,087	+				+1.1
3,212,087	+				+0.5
3,212,088	-				-0.6
3,212,088	-				+0.3
3,212,133	-				+0.4
3,212,199	+		Sama_2682	0.12	-0.3
3,212,199	+		Sama_2682	0.12	-0.0
3,212,244	+		Sama_2682	0.17	+0.1
3,212,309	+		Sama_2682	0.24	-0.2
3,212,310	-		Sama_2682	0.24	-0.9
3,212,310	-		Sama_2682	0.24	-1.2
3,212,315	-		Sama_2682	0.25	-0.7
3,212,322	+		Sama_2682	0.25	+1.4
3,212,356	+		Sama_2682	0.29	+0.2
3,212,356	+		Sama_2682	0.29	-0.5
3,212,356	+		Sama_2682	0.29	+1.5
3,212,356	+		Sama_2682	0.29	+0.5
3,212,356	+		Sama_2682	0.29	+0.2
3,212,356	+		Sama_2682	0.29	+0.5
3,212,357	-		Sama_2682	0.29	+0.6
3,212,357	-		Sama_2682	0.29	-0.5
3,212,357	-		Sama_2682	0.29	-0.6
3,212,357	-		Sama_2682	0.29	+0.3
3,212,357	-		Sama_2682	0.29	+0.2
3,212,417	+		Sama_2682	0.36	+0.4
3,212,417	+		Sama_2682	0.36	+0.7
3,212,418	-		Sama_2682	0.36	-0.2
3,212,418	-		Sama_2682	0.36	+0.2
3,212,427	-		Sama_2682	0.37	-0.0
3,212,427	-		Sama_2682	0.37	+0.4
3,212,427	-		Sama_2682	0.37	+0.9
3,212,427	-		Sama_2682	0.37	+0.8
3,212,427	-		Sama_2682	0.37	-1.0
3,212,427	-		Sama_2682	0.37	-0.3
3,212,427	-		Sama_2682	0.37	-0.2
3,212,427	-		Sama_2682	0.37	+1.0
3,212,428	+		Sama_2682	0.37	+0.6
3,212,429	-		Sama_2682	0.37	-0.3
3,212,429	-		Sama_2682	0.37	+0.8
3,212,429	-		Sama_2682	0.37	+1.4
3,212,429	-		Sama_2682	0.37	+0.1
3,212,490	+		Sama_2682	0.44	+0.2
3,212,490	+		Sama_2682	0.44	+0.8
3,212,491	-		Sama_2682	0.44	+0.1
3,212,491	-		Sama_2682	0.44	+0.4
3,212,491	-		Sama_2682	0.44	+0.8
3,212,491	-		Sama_2682	0.44	-0.9
3,212,623	-		Sama_2682	0.58	+0.2
3,212,623	-		Sama_2682	0.58	-0.4
3,212,623	-		Sama_2682	0.58	-0.8
3,212,703	-		Sama_2682	0.67	-0.2
3,212,768	+		Sama_2682	0.74	-0.2
3,212,768	+		Sama_2682	0.74	+0.9
3,212,769	-		Sama_2682	0.74	-0.8
3,212,800	+		Sama_2682	0.78	+0.4
3,212,801	-		Sama_2682	0.78	-0.1
3,212,830	-		Sama_2682	0.81	-0.3
3,212,830	-		Sama_2682	0.81	+0.8
3,212,848	-		Sama_2682	0.83	-0.2
3,212,887	+		Sama_2682	0.87	-0.1
3,212,887	+		Sama_2682	0.87	+0.1
3,212,887	+		Sama_2682	0.87	-1.0
3,212,888	-		Sama_2682	0.87	-0.1
3,212,888	-		Sama_2682	0.87	+0.5
3,212,950	-				-1.1
3,212,974	+				-0.8
3,213,019	+				+0.8
3,213,072	+				+1.0
3,213,073	-				+0.4
3,213,228	-		Sama_2683	0.32	-0.2
3,213,321	+		Sama_2683	0.46	+1.3
3,213,321	+		Sama_2683	0.46	-0.8
3,213,321	+		Sama_2683	0.46	+0.3
3,213,370	+		Sama_2683	0.53	+0.2
3,213,370	+		Sama_2683	0.53	+0.0
3,213,371	-		Sama_2683	0.53	+1.0
3,213,371	-		Sama_2683	0.53	+1.7
3,213,371	-		Sama_2683	0.53	-1.2
3,213,371	-		Sama_2683	0.53	-0.1
3,213,375	-		Sama_2683	0.54	+1.4
3,213,375	-		Sama_2683	0.54	+0.4
3,213,375	-		Sama_2683	0.54	-0.8
3,213,384	-		Sama_2683	0.55	+0.5
3,213,438	+		Sama_2683	0.63	+0.1
3,213,439	-		Sama_2683	0.63	-0.0
3,213,449	+		Sama_2683	0.65	-0.2
3,213,449	+		Sama_2683	0.65	-0.1
3,213,449	+		Sama_2683	0.65	+0.0
3,213,449	+		Sama_2683	0.65	+0.8
3,213,450	-		Sama_2683	0.65	+0.8
3,213,450	-		Sama_2683	0.65	+0.6
3,213,450	-		Sama_2683	0.65	+0.8
3,213,450	-		Sama_2683	0.65	-0.5
3,213,450	-		Sama_2683	0.65	+0.8
3,213,450	-		Sama_2683	0.65	-0.0
3,213,450	-		Sama_2683	0.65	+0.7
3,213,450	-		Sama_2683	0.65	+0.6
3,213,450	-		Sama_2683	0.65	+0.6
3,213,450	-		Sama_2683	0.65	+0.5
3,213,462	-		Sama_2683	0.67	-0.1
3,213,482	-		Sama_2683	0.70	-0.9
3,213,482	-		Sama_2683	0.70	+0.8
3,213,548	+		Sama_2683	0.80	+0.3
3,213,548	+		Sama_2683	0.80	-1.1
3,213,549	-		Sama_2683	0.80	-0.7
3,213,609	-		Sama_2683	0.89	-1.1
3,213,609	-		Sama_2683	0.89	+1.2
3,213,609	-		Sama_2683	0.89	+0.3
3,213,616	+				+0.6
3,213,616	+				+0.6
3,213,616	+				+0.3
3,213,617	-				-2.0
3,213,617	-				+0.4
3,213,617	-				-2.2
3,213,644	-				-0.0
3,213,658	+				+0.6
3,213,658	+				+0.2
3,213,659	-				+1.6
3,213,661	+				+1.8
3,213,662	-				-0.1
3,213,662	-				+0.4
3,213,677	+				+1.6
3,213,703	+				+0.3
3,213,703	+				-0.1
3,213,703	+				-1.2
3,213,703	+				-0.4
3,213,704	-				+0.2
3,213,704	-				-0.1
3,213,704	-				-0.4
3,213,704	-				+0.7
3,213,778	+		Sama_2684	0.12	+0.0
3,213,863	+		Sama_2684	0.30	+0.2
3,213,863	+		Sama_2684	0.30	-0.0
3,213,863	+		Sama_2684	0.30	-0.2
3,213,863	+		Sama_2684	0.30	+0.3
3,213,863	+		Sama_2684	0.30	-1.0
3,213,863	+		Sama_2684	0.30	-0.3
3,213,863	+		Sama_2684	0.30	-0.1
3,213,863	+		Sama_2684	0.30	-0.6
3,213,863	+		Sama_2684	0.30	+0.7
3,213,864	-		Sama_2684	0.30	-0.1
3,213,864	-		Sama_2684	0.30	+0.6
3,213,864	-		Sama_2684	0.30	+0.8
3,213,864	-		Sama_2684	0.30	-2.4
3,213,887	+		Sama_2684	0.35	+0.1
3,213,949	+		Sama_2684	0.48	-1.4
3,213,949	+		Sama_2684	0.48	-0.1
3,213,950	-		Sama_2684	0.48	+0.4
3,213,950	-		Sama_2684	0.48	-0.4
3,213,950	-		Sama_2684	0.48	-0.8
3,213,950	-		Sama_2684	0.48	-0.6
3,214,253	+				+1.6
3,214,253	+				-0.5
3,214,254	-				+0.9
3,214,317	+				-0.1
3,214,318	-				-0.8
3,214,447	+		Sama_2685	0.19	-1.8
3,214,477	+		Sama_2685	0.23	-0.8
3,214,477	+		Sama_2685	0.23	-0.1
3,214,477	+		Sama_2685	0.23	-1.2
3,214,477	+		Sama_2685	0.23	-0.8
3,214,478	-		Sama_2685	0.23	+1.3
3,214,478	-		Sama_2685	0.23	+1.3
3,214,478	-		Sama_2685	0.23	+1.1
3,214,479	+		Sama_2685	0.23	-1.2
3,214,479	+		Sama_2685	0.23	+0.3
3,214,480	-		Sama_2685	0.23	+0.8
3,214,480	-		Sama_2685	0.23	-0.2
3,214,480	-		Sama_2685	0.23	+1.6
3,214,503	+		Sama_2685	0.26	+1.6
3,214,503	+		Sama_2685	0.26	-1.1
3,214,503	+		Sama_2685	0.26	+0.4
3,214,503	+		Sama_2685	0.26	+0.6
3,214,503	+		Sama_2685	0.26	-1.7
3,214,503	+		Sama_2685	0.26	-0.0
3,214,503	+		Sama_2685	0.26	+0.1
3,214,503	+		Sama_2685	0.26	-0.4
3,214,503	+		Sama_2685	0.26	-0.5
3,214,504	-		Sama_2685	0.26	+0.3
3,214,504	-		Sama_2685	0.26	-3.4
3,214,504	-		Sama_2685	0.26	-0.2
3,214,504	-		Sama_2685	0.26	+0.5
3,214,573	+		Sama_2685	0.35	+0.4
3,214,573	+		Sama_2685	0.35	+0.6
3,214,574	-		Sama_2685	0.35	+0.8
3,214,574	-		Sama_2685	0.35	+1.4
3,214,574	-		Sama_2685	0.35	+0.1
3,214,595	+		Sama_2685	0.37	-1.3
3,214,596	-		Sama_2685	0.38	-0.5
3,214,634	-		Sama_2685	0.42	-0.2