Strain Fitness in Shewanella amazonensis SB2B around Sama_1108

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
1,342,000	+				+0.4
1,342,040	-				+1.0
1,342,117	+				+0.7
1,342,117	+				-0.1
1,342,118	-				-0.8
1,342,118	-				-0.3
1,342,182	-				+0.1
1,342,202	+				-0.1
1,342,202	+				-2.9
1,342,202	+				+0.3
1,342,203	-				-0.5
1,342,236	+				-0.3
1,342,236	+				-0.9
1,342,237	-				-1.0
1,342,239	+				-0.1
1,342,240	-				-1.1
1,342,240	-				+0.2
1,342,261	+				+0.7
1,342,262	-				+0.3
1,342,262	-				+0.9
1,342,379	+		Sama_1107	0.27	+0.7
1,342,379	+		Sama_1107	0.27	+0.0
1,342,380	-		Sama_1107	0.27	-0.9
1,342,380	-		Sama_1107	0.27	+0.3
1,342,438	+		Sama_1107	0.37	-0.4
1,342,562	+		Sama_1107	0.57	-0.1
1,342,562	+		Sama_1107	0.57	+0.1
1,342,650	+		Sama_1107	0.72	+0.9
1,342,651	-		Sama_1107	0.72	+0.1
1,342,651	-		Sama_1107	0.72	-1.3
1,342,651	-		Sama_1107	0.72	-0.7
1,342,651	-		Sama_1107	0.72	-0.6
1,342,680	+		Sama_1107	0.77	+0.4
1,342,681	-		Sama_1107	0.77	-1.2
1,342,681	-		Sama_1107	0.77	-1.9
1,342,681	-		Sama_1107	0.77	-1.5
1,342,693	+		Sama_1107	0.79	-0.5
1,342,693	+		Sama_1107	0.79	+0.1
1,342,693	+		Sama_1107	0.79	-0.3
1,342,694	-		Sama_1107	0.80	-1.1
1,342,694	-		Sama_1107	0.80	-1.3
1,342,707	+		Sama_1107	0.82	-0.7
1,342,707	+		Sama_1107	0.82	-0.6
1,342,708	-		Sama_1107	0.82	+1.3
1,342,708	-		Sama_1107	0.82	-0.6
1,342,712	+		Sama_1107	0.82	-0.8
1,342,843	+				-0.5
1,342,843	+				+0.7
1,342,904	+				+0.1
1,342,919	+				-0.4
1,342,970	+				-3.3
1,342,971	-				-0.6
1,342,987	+				-0.3
1,343,042	-				+1.1
1,343,070	-				+1.3
1,343,108	+				-1.0
1,343,109	-				-0.9
1,343,198	+		Sama_1108	0.11	+1.1
1,343,198	+		Sama_1108	0.11	-0.5
1,343,198	+		Sama_1108	0.11	-0.4
1,343,216	+		Sama_1108	0.12	-0.9
1,343,217	-		Sama_1108	0.12	-0.1
1,343,283	+		Sama_1108	0.15	+0.7
1,343,283	+		Sama_1108	0.15	+0.4
1,343,284	-		Sama_1108	0.16	+0.8
1,343,284	-		Sama_1108	0.16	+1.1
1,343,284	-		Sama_1108	0.16	+0.1
1,343,284	-		Sama_1108	0.16	-0.1
1,343,284	-		Sama_1108	0.16	+0.7
1,343,316	+		Sama_1108	0.17	-0.5
1,343,317	-		Sama_1108	0.17	+0.8
1,343,317	-		Sama_1108	0.17	+0.0
1,343,317	-		Sama_1108	0.17	+0.6
1,343,341	+		Sama_1108	0.18	-0.2
1,343,341	+		Sama_1108	0.18	-0.6
1,343,342	-		Sama_1108	0.18	-0.1
1,343,346	-		Sama_1108	0.19	+0.6
1,343,385	-		Sama_1108	0.20	+1.3
1,343,396	+		Sama_1108	0.21	-0.1
1,343,396	+		Sama_1108	0.21	-0.3
1,343,396	+		Sama_1108	0.21	-0.7
1,343,397	-		Sama_1108	0.21	+0.4
1,343,397	-		Sama_1108	0.21	+0.0
1,343,457	+		Sama_1108	0.24	+1.0
1,343,457	+		Sama_1108	0.24	-0.5
1,343,458	-		Sama_1108	0.24	+0.7
1,343,458	-		Sama_1108	0.24	-0.3
1,343,485	-		Sama_1108	0.25	+0.2
1,343,570	+		Sama_1108	0.30	+0.5
1,343,570	+		Sama_1108	0.30	-1.2
1,343,570	+		Sama_1108	0.30	-1.0
1,343,570	+		Sama_1108	0.30	-1.0
1,343,570	+		Sama_1108	0.30	+0.1
1,343,571	-		Sama_1108	0.30	+0.7
1,343,571	-		Sama_1108	0.30	+0.3
1,343,571	-		Sama_1108	0.30	-0.7
1,343,571	-		Sama_1108	0.30	+1.5
1,343,571	-		Sama_1108	0.30	-0.0
1,343,571	-		Sama_1108	0.30	+0.1
1,343,571	-		Sama_1108	0.30	+1.3
1,343,662	+		Sama_1108	0.34	+0.3
1,343,662	+		Sama_1108	0.34	+0.8
1,343,662	+		Sama_1108	0.34	-0.1
1,343,662	+		Sama_1108	0.34	-0.6
1,343,662	+		Sama_1108	0.34	+1.0
1,343,662	+		Sama_1108	0.34	-0.1
1,343,662	+		Sama_1108	0.34	+0.3
1,343,663	-		Sama_1108	0.34	-2.3
1,343,663	-		Sama_1108	0.34	-0.1
1,343,663	-		Sama_1108	0.34	+0.9
1,343,663	-		Sama_1108	0.34	-1.0
1,343,670	-		Sama_1108	0.35	-0.9
1,343,700	-		Sama_1108	0.36	-1.0
1,343,712	+		Sama_1108	0.37	-0.2
1,343,712	+		Sama_1108	0.37	-2.1
1,343,713	-		Sama_1108	0.37	-1.6
1,343,789	+		Sama_1108	0.40	-0.6
1,343,789	+		Sama_1108	0.40	-0.7
1,343,790	-		Sama_1108	0.40	+0.4
1,343,790	-		Sama_1108	0.40	-0.8
1,343,801	-		Sama_1108	0.41	-0.4
1,343,940	+		Sama_1108	0.48	-0.4
1,344,126	+		Sama_1108	0.57	+0.8
1,344,127	-		Sama_1108	0.57	-0.0
1,344,150	+		Sama_1108	0.58	-0.6
1,344,150	+		Sama_1108	0.58	+0.1
1,344,150	+		Sama_1108	0.58	+0.6
1,344,151	-		Sama_1108	0.58	-1.1
1,344,151	-		Sama_1108	0.58	+0.1
1,344,151	-		Sama_1108	0.58	-0.2
1,344,158	+		Sama_1108	0.59	-0.6
1,344,158	+		Sama_1108	0.59	-0.5
1,344,158	+		Sama_1108	0.59	+0.8
1,344,159	-		Sama_1108	0.59	+0.7
1,344,159	-		Sama_1108	0.59	+0.4
1,344,159	-		Sama_1108	0.59	-0.6
1,344,159	-		Sama_1108	0.59	-1.1
1,344,208	-		Sama_1108	0.61	+1.5
1,344,213	+		Sama_1108	0.61	+0.4
1,344,213	+		Sama_1108	0.61	-0.9
1,344,214	-		Sama_1108	0.61	-0.7
1,344,214	-		Sama_1108	0.61	+0.7
1,344,217	+		Sama_1108	0.61	+0.3
1,344,217	+		Sama_1108	0.61	-1.3
1,344,217	+		Sama_1108	0.61	+0.1
1,344,217	+		Sama_1108	0.61	+0.7
1,344,217	+		Sama_1108	0.61	+0.1
1,344,218	-		Sama_1108	0.61	-0.4
1,344,218	-		Sama_1108	0.61	-0.6
1,344,218	-		Sama_1108	0.61	+0.3
1,344,218	-		Sama_1108	0.61	+1.9
1,344,218	-		Sama_1108	0.61	-0.0
1,344,218	-		Sama_1108	0.61	-1.9
1,344,219	+		Sama_1108	0.62	+0.3
1,344,219	+		Sama_1108	0.62	-0.2
1,344,219	+		Sama_1108	0.62	+0.1
1,344,219	+		Sama_1108	0.62	-0.2
1,344,220	-		Sama_1108	0.62	+0.1
1,344,220	-		Sama_1108	0.62	+0.0
1,344,220	-		Sama_1108	0.62	-0.3
1,344,301	-		Sama_1108	0.66	-1.9
1,344,411	+		Sama_1108	0.71	+0.2
1,344,411	+		Sama_1108	0.71	-0.5
1,344,411	+		Sama_1108	0.71	+0.4
1,344,411	+		Sama_1108	0.71	-0.2
1,344,412	-		Sama_1108	0.71	+1.2
1,344,412	-		Sama_1108	0.71	+0.1
1,344,438	+		Sama_1108	0.72	-0.4
1,344,438	+		Sama_1108	0.72	+0.4
1,344,485	+		Sama_1108	0.75	+2.1
1,344,491	+		Sama_1108	0.75	+0.5
1,344,492	-		Sama_1108	0.75	+0.1
1,344,492	-		Sama_1108	0.75	-0.3
1,344,580	+		Sama_1108	0.79	-0.4
1,344,580	+		Sama_1108	0.79	-1.1
1,344,581	-		Sama_1108	0.79	-1.1
1,344,657	-		Sama_1108	0.83	+1.0
1,344,657	-		Sama_1108	0.83	-0.4
1,344,657	-		Sama_1108	0.83	+0.4
1,344,681	+		Sama_1108	0.84	+0.5
1,344,682	-		Sama_1108	0.84	+0.7
1,344,682	-		Sama_1108	0.84	-0.3
1,344,783	+		Sama_1108	0.89	+1.6
1,344,855	+				+0.0
1,344,855	+				-0.1
1,344,855	+				-0.2
1,344,856	-				+0.2
1,344,898	+				-1.5
1,344,903	+				-0.3
1,344,938	-				+1.3
1,344,992	+				-0.0
1,345,001	+				+0.9
1,345,001	+				-0.0
1,345,001	+				+0.9
1,345,002	-				-0.3
1,345,013	+				+0.0
1,345,013	+				+0.9
1,345,013	+				+1.0
1,345,013	+				-1.9
1,345,013	+				-0.7
1,345,013	+				-0.0
1,345,013	+				-0.5
1,345,013	+				-1.1
1,345,014	-				+0.1
1,345,014	-				+0.7
1,345,014	-				+0.0
1,345,014	-				-0.8
1,345,014	-				-0.5
1,345,014	-				-0.1
1,345,029	-				+0.4
1,345,043	+				+0.8
1,345,044	-				-0.1
1,345,068	+				-0.0
1,345,068	+				+0.4
1,345,068	+				-1.3
1,345,068	+				+0.3
1,345,068	+				-0.9
1,345,068	+				-1.4
1,345,069	-				+0.9
1,345,069	-				+0.8
1,345,069	-				+0.2
1,345,069	-				+1.3
1,345,069	-				+0.7
1,345,077	+				-1.1
1,345,077	+				+0.4
1,345,077	+				+0.7
1,345,077	+				+0.1
1,345,077	+				-0.4
1,345,078	-				+1.8
1,345,078	-				-0.9
1,345,078	-				+0.1
1,345,081	+				-0.4
1,345,081	+				+2.0
1,345,082	-				+0.3
1,345,082	-				-1.1
1,345,082	-				-0.1
1,345,082	-				-0.6
1,345,172	-				+0.2
1,345,189	+				-1.7
1,345,219	-				-0.3
1,345,229	+				+1.3
1,345,230	-				-0.5
1,345,230	-				-1.0
1,345,233	-				+0.7
1,345,233	-				-0.8
1,345,277	-				+1.2
1,345,308	+				-0.3
1,345,308	+				-0.9
1,345,366	+				+0.4
1,345,367	-				+0.4
1,345,367	-				+0.9
1,345,367	-				+0.4
1,345,384	+				-0.9
1,345,387	-				+0.6
1,345,387	-				+0.7
1,345,399	+				+0.2
1,345,428	-				+0.6
1,345,441	+				+1.0
1,345,442	-				+0.2
1,345,455	+				-0.3
1,345,455	+				-0.3
1,345,471	+				+0.6
1,345,471	+				-0.3
1,345,471	+				-0.8
1,345,471	+				+0.0
1,345,472	-				-0.3
1,345,472	-				+1.5
1,345,629	+		Sama_1109	0.41	+1.2
1,345,629	+		Sama_1109	0.41	-0.2
1,345,629	+		Sama_1109	0.41	-2.1
1,345,630	-		Sama_1109	0.42	+0.1
1,345,630	-		Sama_1109	0.42	-0.1
1,345,656	+		Sama_1109	0.50	-0.3
1,345,679	-		Sama_1109	0.56	-2.2
1,345,679	-		Sama_1109	0.56	+0.0
1,345,754	-		Sama_1109	0.79	+0.3
1,345,770	+		Sama_1109	0.84	-0.3
1,345,771	-		Sama_1109	0.84	+0.5
1,345,771	-		Sama_1109	0.84	+0.2
1,345,771	-		Sama_1109	0.84	-0.4
1,345,771	-		Sama_1109	0.84	+0.3
1,345,771	-		Sama_1109	0.84	+0.7
1,345,804	+				+0.6
1,345,852	+				-1.5
1,345,852	+				+0.7
1,345,853	-				+0.2
1,345,855	-				-0.5
1,345,888	+				+1.0
1,345,889	-				+0.0
1,345,889	-				+0.3
1,345,891	-				-0.2
1,345,891	-				+0.1
1,345,891	-				-0.7
1,345,891	-				+0.4
1,345,939	+				-0.3
1,345,939	+				+2.3
1,345,940	-				-0.6
1,345,940	-				-0.6
1,345,940	-				-0.3
1,345,940	-				-0.3