Experiment: Cytidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0627 and Sama_0628 are separated by 303 nucleotides Sama_0628 and Sama_0629 are separated by 1 nucleotides Sama_0629 and rumB are separated by 34 nucleotides
Sama_0627: Sama_0627 - hypothetical protein (RefSeq), at 780,003 to 780,449
_0627
Sama_0628: Sama_0628 - MarR family transcriptional regulator (RefSeq), at 780,753 to 781,187
_0628
Sama_0629: Sama_0629 - glycerol-3-phosphate dehydrogenase (RefSeq), at 781,189 to 782,403
_0629
Sama_0630: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 782,438 to 783,592
rumB
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.200 kb on + strand, within Sama_0627 at 780.200 kb on + strand, within Sama_0627 at 780.200 kb on + strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.201 kb on - strand, within Sama_0627 at 780.206 kb on - strand, within Sama_0627 at 780.206 kb on - strand, within Sama_0627 at 780.206 kb on - strand, within Sama_0627 at 780.262 kb on + strand, within Sama_0627 at 780.263 kb on - strand, within Sama_0627 at 780.263 kb on - strand, within Sama_0627 at 780.263 kb on - strand, within Sama_0627 at 780.269 kb on + strand, within Sama_0627 at 780.270 kb on - strand, within Sama_0627 at 780.270 kb on - strand, within Sama_0627 at 780.270 kb on - strand, within Sama_0627 at 780.270 kb on - strand, within Sama_0627 at 780.270 kb on - strand, within Sama_0627 at 780.340 kb on + strand, within Sama_0627 at 780.341 kb on - strand, within Sama_0627 at 780.341 kb on - strand, within Sama_0627 at 780.389 kb on + strand, within Sama_0627 at 780.431 kb on + strand at 780.432 kb on - strand at 780.432 kb on - strand at 780.432 kb on - strand at 780.432 kb on - strand at 780.435 kb on + strand at 780.435 kb on + strand at 780.436 kb on - strand at 780.437 kb on + strand at 780.437 kb on + strand at 780.437 kb on + strand at 780.439 kb on + strand at 780.439 kb on + strand at 780.439 kb on + strand at 780.439 kb on + strand at 780.440 kb on - strand at 780.440 kb on - strand at 780.508 kb on - strand at 780.537 kb on - strand at 780.550 kb on + strand at 780.550 kb on + strand at 780.551 kb on - strand at 780.639 kb on + strand at 780.640 kb on - strand at 780.640 kb on - strand at 780.705 kb on + strand at 780.706 kb on - strand at 780.716 kb on + strand at 780.716 kb on + strand at 780.716 kb on + strand at 780.717 kb on - strand at 780.731 kb on - strand at 780.732 kb on + strand at 780.732 kb on + strand at 780.732 kb on + strand at 780.761 kb on + strand at 780.761 kb on + strand at 780.762 kb on - strand at 780.762 kb on - strand at 780.799 kb on - strand, within Sama_0628 at 780.828 kb on + strand, within Sama_0628 at 780.828 kb on + strand, within Sama_0628 at 780.838 kb on + strand, within Sama_0628 at 780.861 kb on + strand, within Sama_0628 at 780.861 kb on + strand, within Sama_0628 at 780.861 kb on + strand, within Sama_0628 at 780.861 kb on + strand, within Sama_0628 at 780.862 kb on - strand, within Sama_0628 at 780.862 kb on - strand, within Sama_0628 at 780.870 kb on + strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.871 kb on - strand, within Sama_0628 at 780.955 kb on + strand, within Sama_0628 at 781.083 kb on - strand, within Sama_0628 at 781.185 kb on + strand at 781.185 kb on + strand at 781.185 kb on + strand at 781.185 kb on + strand at 781.185 kb on + strand at 781.185 kb on + strand at 781.186 kb on - strand at 781.186 kb on - strand at 781.186 kb on - strand at 781.186 kb on - strand at 781.186 kb on - strand at 781.186 kb on - strand at 781.242 kb on - strand at 781.268 kb on - strand at 781.351 kb on + strand, within Sama_0629 at 781.351 kb on + strand, within Sama_0629 at 781.352 kb on - strand, within Sama_0629 at 781.352 kb on - strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.362 kb on + strand, within Sama_0629 at 781.363 kb on - strand, within Sama_0629 at 781.363 kb on - strand, within Sama_0629 at 781.363 kb on - strand, within Sama_0629 at 781.363 kb on - strand, within Sama_0629 at 781.363 kb on - strand, within Sama_0629 at 781.383 kb on + strand, within Sama_0629 at 781.383 kb on + strand, within Sama_0629 at 781.383 kb on + strand, within Sama_0629 at 781.383 kb on + strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.384 kb on - strand, within Sama_0629 at 781.412 kb on + strand, within Sama_0629 at 781.412 kb on + strand, within Sama_0629 at 781.412 kb on + strand, within Sama_0629 at 781.413 kb on - strand, within Sama_0629 at 781.413 kb on - strand, within Sama_0629 at 781.450 kb on + strand, within Sama_0629 at 781.450 kb on + strand, within Sama_0629 at 781.462 kb on + strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.492 kb on - strand, within Sama_0629 at 781.513 kb on + strand, within Sama_0629 at 781.514 kb on - strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.524 kb on - strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.593 kb on - strand, within Sama_0629 at 781.624 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.761 kb on + strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.933 kb on + strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.971 kb on + strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.080 kb on + strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.089 kb on + strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.139 kb on + strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.323 kb on - strand at 782.346 kb on + strand at 782.385 kb on + strand at 782.402 kb on - strand at 782.420 kb on + strand at 782.450 kb on + strand at 782.451 kb on - strand at 782.705 kb on + strand, within rumB at 782.764 kb on + strand, within rumB at 782.765 kb on - strand, within rumB at 782.803 kb on + strand, within rumB at 782.803 kb on + strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.845 kb on + strand, within rumB at 782.845 kb on + strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.933 kb on - strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.099 kb on + strand, within rumB at 783.100 kb on - strand, within rumB at 783.102 kb on - strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.169 kb on - strand, within rumB at 783.280 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine remove 780,200 + Sama_0627 0.44 +0.1 780,200 + Sama_0627 0.44 +1.5 780,200 + Sama_0627 0.44 +0.0 780,201 - Sama_0627 0.44 +0.4 780,201 - Sama_0627 0.44 -0.6 780,201 - Sama_0627 0.44 +0.2 780,201 - Sama_0627 0.44 +0.6 780,201 - Sama_0627 0.44 +0.4 780,201 - Sama_0627 0.44 -0.3 780,201 - Sama_0627 0.44 +1.4 780,201 - Sama_0627 0.44 +0.9 780,201 - Sama_0627 0.44 -2.4 780,201 - Sama_0627 0.44 +0.6 780,201 - Sama_0627 0.44 -0.2 780,201 - Sama_0627 0.44 +0.2 780,206 - Sama_0627 0.45 +0.2 780,206 - Sama_0627 0.45 +0.9 780,206 - Sama_0627 0.45 -0.3 780,262 + Sama_0627 0.58 +2.5 780,263 - Sama_0627 0.58 -0.3 780,263 - Sama_0627 0.58 -0.5 780,263 - Sama_0627 0.58 +0.1 780,269 + Sama_0627 0.60 +0.5 780,270 - Sama_0627 0.60 +1.1 780,270 - Sama_0627 0.60 -0.3 780,270 - Sama_0627 0.60 +1.0 780,270 - Sama_0627 0.60 -0.3 780,270 - Sama_0627 0.60 -0.9 780,340 + Sama_0627 0.75 +0.3 780,341 - Sama_0627 0.76 +0.1 780,341 - Sama_0627 0.76 +0.3 780,389 + Sama_0627 0.86 +0.8 780,431 + +1.2 780,432 - -2.6 780,432 - -0.3 780,432 - +0.8 780,432 - -1.4 780,435 + +0.6 780,435 + -0.1 780,436 - -1.1 780,437 + -0.4 780,437 + +0.7 780,437 + +0.5 780,439 + -0.9 780,439 + -1.5 780,439 + -0.3 780,439 + -0.1 780,440 - -0.3 780,440 - -0.3 780,508 - +1.4 780,537 - -0.0 780,550 + +0.0 780,550 + +1.3 780,551 - +0.2 780,639 + -0.1 780,640 - +0.9 780,640 - +0.2 780,705 + +0.5 780,706 - -0.1 780,716 + -0.4 780,716 + +1.9 780,716 + +0.5 780,717 - +0.3 780,731 - -0.3 780,732 + +0.3 780,732 + +0.1 780,732 + +0.9 780,761 + -1.2 780,761 + -1.2 780,762 - -1.1 780,762 - -0.3 780,799 - Sama_0628 0.11 -1.9 780,828 + Sama_0628 0.17 -1.3 780,828 + Sama_0628 0.17 -0.9 780,838 + Sama_0628 0.20 +0.1 780,861 + Sama_0628 0.25 +0.5 780,861 + Sama_0628 0.25 -0.4 780,861 + Sama_0628 0.25 -0.9 780,861 + Sama_0628 0.25 -2.7 780,862 - Sama_0628 0.25 -1.1 780,862 - Sama_0628 0.25 -1.9 780,870 + Sama_0628 0.27 +0.1 780,871 - Sama_0628 0.27 -1.7 780,871 - Sama_0628 0.27 -0.1 780,871 - Sama_0628 0.27 -2.1 780,871 - Sama_0628 0.27 -1.1 780,871 - Sama_0628 0.27 +0.2 780,871 - Sama_0628 0.27 -0.0 780,955 + Sama_0628 0.46 -2.1 781,083 - Sama_0628 0.76 -1.5 781,185 + +0.3 781,185 + -1.1 781,185 + +0.2 781,185 + +2.9 781,185 + +0.2 781,185 + -2.3 781,186 - -0.8 781,186 - +0.5 781,186 - +0.3 781,186 - -0.2 781,186 - +0.1 781,186 - +0.1 781,242 - +0.3 781,268 - +0.4 781,351 + Sama_0629 0.13 +0.3 781,351 + Sama_0629 0.13 -0.5 781,352 - Sama_0629 0.13 -0.3 781,352 - Sama_0629 0.13 -0.5 781,362 + Sama_0629 0.14 -0.7 781,362 + Sama_0629 0.14 -0.8 781,362 + Sama_0629 0.14 +1.6 781,362 + Sama_0629 0.14 +0.9 781,362 + Sama_0629 0.14 -0.5 781,362 + Sama_0629 0.14 -0.6 781,363 - Sama_0629 0.14 -0.1 781,363 - Sama_0629 0.14 -0.6 781,363 - Sama_0629 0.14 -0.8 781,363 - Sama_0629 0.14 -0.7 781,363 - Sama_0629 0.14 +0.9 781,383 + Sama_0629 0.16 +0.8 781,383 + Sama_0629 0.16 -1.6 781,383 + Sama_0629 0.16 -0.1 781,383 + Sama_0629 0.16 -0.8 781,384 - Sama_0629 0.16 -0.6 781,384 - Sama_0629 0.16 +0.5 781,384 - Sama_0629 0.16 +0.5 781,384 - Sama_0629 0.16 +1.5 781,384 - Sama_0629 0.16 -1.0 781,384 - Sama_0629 0.16 -0.8 781,384 - Sama_0629 0.16 -0.3 781,412 + Sama_0629 0.18 +0.8 781,412 + Sama_0629 0.18 -0.3 781,412 + Sama_0629 0.18 +0.1 781,413 - Sama_0629 0.18 -0.2 781,413 - Sama_0629 0.18 -2.3 781,450 + Sama_0629 0.21 -0.8 781,450 + Sama_0629 0.21 -0.0 781,462 + Sama_0629 0.22 -0.0 781,463 - Sama_0629 0.23 -1.4 781,463 - Sama_0629 0.23 -0.2 781,463 - Sama_0629 0.23 +0.9 781,492 - Sama_0629 0.25 -2.3 781,513 + Sama_0629 0.27 -2.1 781,514 - Sama_0629 0.27 +0.6 781,523 + Sama_0629 0.27 -1.0 781,523 + Sama_0629 0.27 -1.2 781,524 - Sama_0629 0.28 -0.3 781,592 + Sama_0629 0.33 -1.1 781,592 + Sama_0629 0.33 -0.3 781,593 - Sama_0629 0.33 -1.0 781,624 + Sama_0629 0.36 +0.3 781,727 + Sama_0629 0.44 -0.4 781,727 + Sama_0629 0.44 -1.1 781,727 + Sama_0629 0.44 +0.3 781,727 + Sama_0629 0.44 -1.1 781,727 + Sama_0629 0.44 +0.3 781,727 + Sama_0629 0.44 -0.6 781,727 + Sama_0629 0.44 -0.8 781,727 + Sama_0629 0.44 +0.1 781,727 + Sama_0629 0.44 -0.6 781,727 + Sama_0629 0.44 -0.4 781,727 + Sama_0629 0.44 -2.2 781,727 + Sama_0629 0.44 +0.3 781,727 + Sama_0629 0.44 -0.4 781,727 + Sama_0629 0.44 -1.3 781,728 - Sama_0629 0.44 -0.1 781,728 - Sama_0629 0.44 -0.4 781,728 - Sama_0629 0.44 +0.9 781,728 - Sama_0629 0.44 -0.4 781,728 - Sama_0629 0.44 -0.7 781,728 - Sama_0629 0.44 -0.3 781,728 - Sama_0629 0.44 -1.1 781,728 - Sama_0629 0.44 +0.4 781,728 - Sama_0629 0.44 +0.9 781,728 - Sama_0629 0.44 +0.5 781,728 - Sama_0629 0.44 +0.4 781,761 + Sama_0629 0.47 -0.6 781,762 - Sama_0629 0.47 -0.2 781,762 - Sama_0629 0.47 +0.9 781,910 + Sama_0629 0.59 -0.6 781,910 + Sama_0629 0.59 +0.5 781,911 - Sama_0629 0.59 -0.9 781,911 - Sama_0629 0.59 +1.9 781,933 + Sama_0629 0.61 +0.2 781,934 - Sama_0629 0.61 -0.5 781,934 - Sama_0629 0.61 -0.1 781,934 - Sama_0629 0.61 -2.1 781,934 - Sama_0629 0.61 +0.0 781,971 + Sama_0629 0.64 -0.5 781,972 - Sama_0629 0.64 -0.4 781,972 - Sama_0629 0.64 +1.2 781,972 - Sama_0629 0.64 +0.2 781,972 - Sama_0629 0.64 -0.2 782,065 + Sama_0629 0.72 -0.3 782,065 + Sama_0629 0.72 -0.3 782,080 + Sama_0629 0.73 -1.0 782,081 - Sama_0629 0.73 +2.5 782,081 - Sama_0629 0.73 -1.4 782,081 - Sama_0629 0.73 +0.5 782,089 + Sama_0629 0.74 -0.8 782,090 - Sama_0629 0.74 -1.0 782,090 - Sama_0629 0.74 +0.9 782,090 - Sama_0629 0.74 -0.7 782,090 - Sama_0629 0.74 -2.4 782,090 - Sama_0629 0.74 -2.4 782,090 - Sama_0629 0.74 -0.1 782,139 + Sama_0629 0.78 +0.5 782,140 - Sama_0629 0.78 +1.2 782,140 - Sama_0629 0.78 -0.7 782,140 - Sama_0629 0.78 -0.7 782,249 - Sama_0629 0.87 -2.4 782,249 - Sama_0629 0.87 -0.7 782,323 - +1.6 782,346 + -2.8 782,385 + -0.3 782,402 - +0.2 782,420 + +0.0 782,450 + -0.6 782,451 - +1.2 782,705 + rumB Sama_0630 0.23 -0.2 782,764 + rumB Sama_0630 0.28 +1.1 782,765 - rumB Sama_0630 0.28 +1.3 782,803 + rumB Sama_0630 0.32 -0.2 782,803 + rumB Sama_0630 0.32 +0.1 782,804 - rumB Sama_0630 0.32 -0.1 782,804 - rumB Sama_0630 0.32 +0.2 782,804 - rumB Sama_0630 0.32 +0.1 782,804 - rumB Sama_0630 0.32 -0.6 782,804 - rumB Sama_0630 0.32 -0.7 782,804 - rumB Sama_0630 0.32 +0.1 782,810 - rumB Sama_0630 0.32 +0.0 782,810 - rumB Sama_0630 0.32 -0.3 782,845 + rumB Sama_0630 0.35 +0.3 782,845 + rumB Sama_0630 0.35 +0.1 782,846 - rumB Sama_0630 0.35 +0.6 782,846 - rumB Sama_0630 0.35 -2.1 782,846 - rumB Sama_0630 0.35 -0.5 782,932 + rumB Sama_0630 0.43 -0.1 782,932 + rumB Sama_0630 0.43 -0.4 782,932 + rumB Sama_0630 0.43 +0.3 782,932 + rumB Sama_0630 0.43 +1.2 782,933 - rumB Sama_0630 0.43 +0.6 783,027 + rumB Sama_0630 0.51 +0.5 783,027 + rumB Sama_0630 0.51 +0.7 783,027 + rumB Sama_0630 0.51 +0.0 783,099 + rumB Sama_0630 0.57 +0.1 783,100 - rumB Sama_0630 0.57 +0.2 783,102 - rumB Sama_0630 0.57 +0.3 783,132 + rumB Sama_0630 0.60 -0.0 783,132 + rumB Sama_0630 0.60 +0.1 783,132 + rumB Sama_0630 0.60 -0.5 783,133 - rumB Sama_0630 0.60 +1.1 783,133 - rumB Sama_0630 0.60 -0.6 783,133 - rumB Sama_0630 0.60 -0.3 783,169 - rumB Sama_0630 0.63 +0.4 783,280 + rumB Sama_0630 0.73 +0.1 783,357 + rumB Sama_0630 0.80 +0.5 783,357 + rumB Sama_0630 0.80 -0.4 783,357 + rumB Sama_0630 0.80 -0.8 783,357 + rumB Sama_0630 0.80 +0.3
Or see this region's nucleotide sequence