Experiment: copper (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3629 and Shew_3630 are separated by 31 nucleotides Shew_3630 and Shew_3631 are separated by 58 nucleotides Shew_3631 and Shew_3632 overlap by 8 nucleotides
Shew_3629: Shew_3629 - competence protein ComF (RefSeq), at 4,327,289 to 4,328,047
_3629
Shew_3630: Shew_3630 - bioH protein (RefSeq), at 4,328,079 to 4,328,858
_3630
Shew_3631: Shew_3631 - hypothetical protein (RefSeq), at 4,328,917 to 4,329,411
_3631
Shew_3632: Shew_3632 - sulfatase (RefSeq), at 4,329,404 to 4,331,392
_3632
Position (kb) 4328
4329
4330 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4328.056 kb on + strand at 4328.349 kb on + strand, within Shew_3630 at 4328.357 kb on - strand, within Shew_3630 at 4328.570 kb on - strand, within Shew_3630 at 4328.834 kb on - strand at 4329.085 kb on - strand, within Shew_3631 at 4329.289 kb on + strand, within Shew_3631 at 4329.434 kb on + strand at 4329.457 kb on - strand at 4329.548 kb on + strand at 4329.751 kb on - strand, within Shew_3632 at 4329.762 kb on - strand, within Shew_3632 at 4329.838 kb on + strand, within Shew_3632 at 4329.850 kb on + strand, within Shew_3632 at 4330.063 kb on - strand, within Shew_3632 at 4330.089 kb on + strand, within Shew_3632 at 4330.224 kb on - strand, within Shew_3632
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.5 mM remove 4,328,056 + +0.1 4,328,349 + Shew_3630 0.35 -3.4 4,328,357 - Shew_3630 0.36 -3.4 4,328,570 - Shew_3630 0.63 -1.0 4,328,834 - -3.0 4,329,085 - Shew_3631 0.34 +0.4 4,329,289 + Shew_3631 0.75 -0.1 4,329,434 + +0.3 4,329,457 - +0.4 4,329,548 + +0.7 4,329,751 - Shew_3632 0.17 -0.5 4,329,762 - Shew_3632 0.18 +0.1 4,329,838 + Shew_3632 0.22 +0.4 4,329,850 + Shew_3632 0.22 +0.5 4,330,063 - Shew_3632 0.33 +0.2 4,330,089 + Shew_3632 0.34 +0.0 4,330,224 - Shew_3632 0.41 +0.3
Or see this region's nucleotide sequence