Experiment: copper (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3535 and Shew_3536 are separated by 23 nucleotides Shew_3536 and Shew_3537 are separated by 269 nucleotides Shew_3537 and Shew_3538 are separated by 105 nucleotides Shew_3538 and Shew_3539 are separated by 118 nucleotides
Shew_3535: Shew_3535 - RND family efflux transporter MFP subunit (RefSeq), at 4,224,969 to 4,226,558
_3535
Shew_3536: Shew_3536 - hypothetical protein (RefSeq), at 4,226,582 to 4,227,115
_3536
Shew_3537: Shew_3537 - hypothetical protein (RefSeq), at 4,227,385 to 4,227,792
_3537
Shew_3538: Shew_3538 - hypothetical protein (RefSeq), at 4,227,898 to 4,228,335
_3538
Shew_3539: Shew_3539 - hypothetical protein (RefSeq), at 4,228,454 to 4,228,978
_3539
Position (kb) 4227
4228 Strain fitness (log2 ratio) -1
0
1
2 at 4226.523 kb on + strand at 4226.798 kb on + strand, within Shew_3536 at 4227.016 kb on - strand, within Shew_3536 at 4227.016 kb on - strand, within Shew_3536 at 4227.101 kb on + strand at 4227.125 kb on + strand at 4227.172 kb on + strand at 4227.456 kb on - strand, within Shew_3537 at 4227.474 kb on + strand, within Shew_3537 at 4227.728 kb on + strand, within Shew_3537 at 4227.758 kb on - strand at 4227.794 kb on + strand at 4227.794 kb on + strand at 4227.794 kb on + strand at 4227.814 kb on + strand at 4227.879 kb on - strand at 4227.935 kb on - strand at 4227.938 kb on - strand at 4227.986 kb on + strand, within Shew_3538 at 4228.082 kb on + strand, within Shew_3538 at 4228.092 kb on + strand, within Shew_3538 at 4228.237 kb on - strand, within Shew_3538 at 4228.262 kb on - strand, within Shew_3538 at 4228.477 kb on - strand at 4228.638 kb on - strand, within Shew_3539
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.5 mM remove 4,226,523 + -0.3 4,226,798 + Shew_3536 0.40 +1.0 4,227,016 - Shew_3536 0.81 +0.1 4,227,016 - Shew_3536 0.81 +0.5 4,227,101 + -0.5 4,227,125 + +0.2 4,227,172 + -0.8 4,227,456 - Shew_3537 0.17 +0.8 4,227,474 + Shew_3537 0.22 -1.0 4,227,728 + Shew_3537 0.84 -1.3 4,227,758 - +0.2 4,227,794 + -0.2 4,227,794 + +0.0 4,227,794 + +0.0 4,227,814 + +2.0 4,227,879 - +0.2 4,227,935 - +1.0 4,227,938 - +0.2 4,227,986 + Shew_3538 0.20 -0.4 4,228,082 + Shew_3538 0.42 +0.1 4,228,092 + Shew_3538 0.44 +0.3 4,228,237 - Shew_3538 0.77 +0.2 4,228,262 - Shew_3538 0.83 -0.5 4,228,477 - +0.2 4,228,638 - Shew_3539 0.35 +0.4
Or see this region's nucleotide sequence