Strain Fitness in Shewanella loihica PV-4 around Shew_1067

Experiment: copper (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmD and rplS are separated by 34 nucleotidesrplS and Shew_1067 are separated by 404 nucleotidesShew_1067 and tyrA overlap by 1 nucleotides Shew_1065: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,226,498 to 1,227,244 trmD Shew_1066: rplS - 50S ribosomal protein L19 (RefSeq), at 1,227,279 to 1,227,629 rplS Shew_1067: Shew_1067 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 1,228,034 to 1,229,125 _1067 Shew_1068: tyrA - bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq), at 1,229,125 to 1,230,279 tyrA Position (kb) 1228 1229 1230Strain fitness (log2 ratio) -1 0 1 2at 1227.791 kb on + strandat 1227.822 kb on - strandat 1228.023 kb on - strandat 1228.032 kb on - strandat 1228.163 kb on + strand, within Shew_1067at 1228.261 kb on + strand, within Shew_1067at 1228.282 kb on + strand, within Shew_1067at 1228.337 kb on + strand, within Shew_1067at 1228.779 kb on + strand, within Shew_1067at 1228.779 kb on + strand, within Shew_1067at 1228.956 kb on + strand, within Shew_1067at 1229.665 kb on - strand, within tyrA

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.5 mM
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1,227,791 + -1.0
1,227,822 - -0.4
1,228,023 - +0.2
1,228,032 - -0.1
1,228,163 + Shew_1067 0.12 +0.1
1,228,261 + Shew_1067 0.21 +1.5
1,228,282 + Shew_1067 0.23 +2.0
1,228,337 + Shew_1067 0.28 +0.5
1,228,779 + Shew_1067 0.68 +0.1
1,228,779 + Shew_1067 0.68 -0.1
1,228,956 + Shew_1067 0.84 +0.1
1,229,665 - tyrA Shew_1068 0.47 +0.0

Or see this region's nucleotide sequence