Experiment: copper (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0482 and Shew_0483 are separated by 2 nucleotides Shew_0483 and Shew_0484 are separated by 121 nucleotides Shew_0484 and Shew_0485 are separated by 36 nucleotides Shew_0485 and Shew_0486 are separated by 92 nucleotides
Shew_0482: Shew_0482 - hypothetical protein (RefSeq), at 539,397 to 540,563
_0482
Shew_0483: Shew_0483 - hypothetical protein (RefSeq), at 540,566 to 541,378
_0483
Shew_0484: Shew_0484 - hypothetical protein (RefSeq), at 541,500 to 542,771
_0484
Shew_0485: Shew_0485 - cold-shock DNA-binding domain-containing protein (RefSeq), at 542,808 to 543,425
_0485
Shew_0486: Shew_0486 - permease (RefSeq), at 543,518 to 544,534
_0486
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1 at 540.699 kb on - strand, within Shew_0483 at 540.824 kb on + strand, within Shew_0483 at 540.906 kb on + strand, within Shew_0483 at 540.914 kb on - strand, within Shew_0483 at 541.592 kb on - strand at 541.912 kb on - strand, within Shew_0484 at 542.109 kb on - strand, within Shew_0484 at 542.441 kb on + strand, within Shew_0484 at 542.637 kb on + strand, within Shew_0484 at 542.639 kb on - strand, within Shew_0484 at 542.669 kb on - strand at 542.851 kb on - strand at 543.095 kb on + strand, within Shew_0485 at 543.559 kb on + strand at 543.567 kb on - strand at 543.679 kb on - strand, within Shew_0486 at 543.679 kb on - strand, within Shew_0486
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.5 mM remove 540,699 - Shew_0483 0.16 +0.1 540,824 + Shew_0483 0.32 +0.3 540,906 + Shew_0483 0.42 -0.3 540,914 - Shew_0483 0.43 +0.5 541,592 - +0.1 541,912 - Shew_0484 0.32 +1.1 542,109 - Shew_0484 0.48 +0.3 542,441 + Shew_0484 0.74 +0.7 542,637 + Shew_0484 0.89 +0.4 542,639 - Shew_0484 0.90 +0.9 542,669 - +0.1 542,851 - +0.3 543,095 + Shew_0485 0.46 -0.4 543,559 + +0.9 543,567 - +0.2 543,679 - Shew_0486 0.16 +0.0 543,679 - Shew_0486 0.16 -0.6
Or see this region's nucleotide sequence