Experiment: copper (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0438 and Shew_0439 are separated by 107 nucleotides Shew_0439 and Shew_0440 are separated by 8 nucleotides Shew_0440 and Shew_0441 are separated by 130 nucleotides
Shew_0438: Shew_0438 - GumN family protein (RefSeq), at 488,537 to 489,421
_0438
Shew_0439: Shew_0439 - CheD, stimulates methylation of MCP proteins (RefSeq), at 489,529 to 490,161
_0439
Shew_0440: Shew_0440 - methyltransferase type 12 (RefSeq), at 490,170 to 491,024
_0440
Shew_0441: Shew_0441 - dehydratase (RefSeq), at 491,155 to 491,994
_0441
Position (kb) 489
490
491 Strain fitness (log2 ratio) -1
0
1 at 489.092 kb on - strand, within Shew_0438 at 489.658 kb on + strand, within Shew_0439 at 489.916 kb on - strand, within Shew_0439 at 490.044 kb on + strand, within Shew_0439 at 490.214 kb on - strand at 490.405 kb on - strand, within Shew_0440 at 490.551 kb on - strand, within Shew_0440 at 490.600 kb on - strand, within Shew_0440 at 490.607 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 491.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.5 mM remove 489,092 - Shew_0438 0.63 +0.7 489,658 + Shew_0439 0.20 +0.2 489,916 - Shew_0439 0.61 -0.4 490,044 + Shew_0439 0.81 -1.0 490,214 - +0.3 490,405 - Shew_0440 0.27 +0.0 490,551 - Shew_0440 0.45 +1.4 490,600 - Shew_0440 0.50 -0.1 490,607 + Shew_0440 0.51 -1.0 490,742 + Shew_0440 0.67 -0.2 490,742 + Shew_0440 0.67 +0.5 490,742 + Shew_0440 0.67 +0.8 491,118 - +0.6
Or see this region's nucleotide sequence