Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3121

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3120 and DvMF_3121 overlap by 4 nucleotidesDvMF_3121 and DvMF_3122 overlap by 1 nucleotidesDvMF_3122 and DvMF_3123 are separated by 60 nucleotides DvMF_3120: DvMF_3120 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq), at 3,940,279 to 3,941,010 _3120 DvMF_3121: DvMF_3121 - putative lipoprotein (RefSeq), at 3,941,007 to 3,941,678 _3121 DvMF_3122: DvMF_3122 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 3,941,678 to 3,942,268 _3122 DvMF_3123: DvMF_3123 - Sec-independent protein translocase, TatC subunit (RefSeq), at 3,942,329 to 3,943,123 _3123 Position (kb) 3941 3942Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3940.153 kb on + strandat 3940.297 kb on + strandat 3940.670 kb on + strand, within DvMF_3120at 3941.044 kb on + strandat 3941.079 kb on - strand, within DvMF_3121at 3941.293 kb on + strand, within DvMF_3121at 3941.311 kb on - strand, within DvMF_3121at 3941.609 kb on + strand, within DvMF_3121at 3941.702 kb on + strandat 3941.748 kb on - strand, within DvMF_3122at 3941.880 kb on + strand, within DvMF_3122at 3942.106 kb on + strand, within DvMF_3122at 3942.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,940,153 + -0.4
3,940,297 + -5.4
3,940,670 + DvMF_3120 0.53 -5.3
3,941,044 + -5.9
3,941,079 - DvMF_3121 0.11 -4.7
3,941,293 + DvMF_3121 0.43 -4.7
3,941,311 - DvMF_3121 0.45 -4.7
3,941,609 + DvMF_3121 0.90 -2.8
3,941,702 + -3.9
3,941,748 - DvMF_3122 0.12 -3.5
3,941,880 + DvMF_3122 0.34 -4.6
3,942,106 + DvMF_3122 0.72 -4.2
3,942,350 - -0.3

Or see this region's nucleotide sequence