Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2489

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2488 and DvMF_2489 are separated by 169 nucleotidesDvMF_2489 and DvMF_2490 are separated by 200 nucleotides DvMF_2488: DvMF_2488 - phosphate binding protein (RefSeq), at 3,140,511 to 3,141,353 _2488 DvMF_2489: DvMF_2489 - diguanylate cyclase (RefSeq), at 3,141,523 to 3,144,033 _2489 DvMF_2490: DvMF_2490 - Polyprenyl synthetase (RefSeq), at 3,144,234 to 3,145,229 _2490 Position (kb) 3141 3142 3143 3144 3145Strain fitness (log2 ratio) -1 0 1at 3140.525 kb on - strandat 3140.619 kb on - strand, within DvMF_2488at 3140.754 kb on - strand, within DvMF_2488at 3141.231 kb on + strand, within DvMF_2488at 3141.540 kb on + strandat 3141.540 kb on + strandat 3141.540 kb on + strandat 3141.548 kb on - strandat 3141.548 kb on - strandat 3141.548 kb on - strandat 3141.636 kb on - strandat 3141.701 kb on - strandat 3141.863 kb on + strand, within DvMF_2489at 3141.864 kb on - strand, within DvMF_2489at 3142.177 kb on + strand, within DvMF_2489at 3142.363 kb on - strand, within DvMF_2489at 3142.504 kb on - strand, within DvMF_2489at 3142.582 kb on + strand, within DvMF_2489at 3142.662 kb on + strand, within DvMF_2489at 3142.663 kb on + strand, within DvMF_2489at 3142.706 kb on - strand, within DvMF_2489at 3142.966 kb on + strand, within DvMF_2489at 3142.998 kb on + strand, within DvMF_2489at 3143.021 kb on + strand, within DvMF_2489at 3143.145 kb on + strand, within DvMF_2489at 3143.164 kb on + strand, within DvMF_2489at 3143.798 kb on - strandat 3143.837 kb on - strandat 3144.039 kb on + strandat 3144.062 kb on + strandat 3144.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,140,525 - -0.9
3,140,619 - DvMF_2488 0.13 -1.2
3,140,754 - DvMF_2488 0.29 -0.1
3,141,231 + DvMF_2488 0.85 -0.3
3,141,540 + +0.1
3,141,540 + -0.2
3,141,540 + -1.2
3,141,548 - -0.4
3,141,548 - -0.6
3,141,548 - -1.2
3,141,636 - -0.4
3,141,701 - +0.4
3,141,863 + DvMF_2489 0.14 -0.2
3,141,864 - DvMF_2489 0.14 -0.2
3,142,177 + DvMF_2489 0.26 +0.3
3,142,363 - DvMF_2489 0.33 -0.4
3,142,504 - DvMF_2489 0.39 -0.5
3,142,582 + DvMF_2489 0.42 -0.2
3,142,662 + DvMF_2489 0.45 -0.2
3,142,663 + DvMF_2489 0.45 -0.6
3,142,706 - DvMF_2489 0.47 -0.1
3,142,966 + DvMF_2489 0.57 -0.7
3,142,998 + DvMF_2489 0.59 -0.4
3,143,021 + DvMF_2489 0.60 -0.0
3,143,145 + DvMF_2489 0.65 +0.4
3,143,164 + DvMF_2489 0.65 +0.8
3,143,798 - -0.5
3,143,837 - -0.1
3,144,039 + -0.4
3,144,062 + +0.3
3,144,239 - -0.6

Or see this region's nucleotide sequence