Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2377

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2376 and DvMF_2377 are separated by 380 nucleotidesDvMF_2377 and DvMF_2378 are separated by 605 nucleotides DvMF_2376: DvMF_2376 - ribonuclease, Rne/Rng family (RefSeq), at 3,001,030 to 3,002,505 _2376 DvMF_2377: DvMF_2377 - Radical SAM domain protein (RefSeq), at 3,002,886 to 3,003,983 _2377 DvMF_2378: DvMF_2378 - tRNA (adenine-N(1)-)-methyltransferase (RefSeq), at 3,004,589 to 3,005,485 _2378 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3003.005 kb on + strand, within DvMF_2377at 3003.189 kb on + strand, within DvMF_2377at 3003.275 kb on - strand, within DvMF_2377at 3003.287 kb on + strand, within DvMF_2377at 3003.593 kb on + strand, within DvMF_2377at 3003.632 kb on + strand, within DvMF_2377at 3003.689 kb on - strand, within DvMF_2377at 3003.917 kb on + strandat 3003.917 kb on + strandat 3004.187 kb on - strandat 3004.239 kb on + strandat 3004.247 kb on - strandat 3004.283 kb on - strandat 3004.306 kb on - strandat 3004.387 kb on + strandat 3004.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,003,005 + DvMF_2377 0.11 -2.8
3,003,189 + DvMF_2377 0.28 -2.6
3,003,275 - DvMF_2377 0.35 -1.8
3,003,287 + DvMF_2377 0.37 -1.8
3,003,593 + DvMF_2377 0.64 -2.8
3,003,632 + DvMF_2377 0.68 -1.9
3,003,689 - DvMF_2377 0.73 -3.8
3,003,917 + -3.5
3,003,917 + -3.0
3,004,187 - -0.5
3,004,239 + -1.2
3,004,247 - -0.5
3,004,283 - -0.3
3,004,306 - -0.7
3,004,387 + +0.1
3,004,669 - -0.8

Or see this region's nucleotide sequence