Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2373

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntprfC and DvMF_2373 are separated by 269 nucleotidesDvMF_2373 and DvMF_2374 overlap by 8 nucleotides DvMF_2372: prfC - peptide chain release factor 3 (RefSeq), at 2,992,478 to 2,994,067 prfC DvMF_2373: DvMF_2373 - multi-sensor hybrid histidine kinase (RefSeq), at 2,994,337 to 2,998,836 _2373 DvMF_2374: DvMF_2374 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 2,998,829 to 3,000,175 _2374 Position (kb) 2994 2995 2996 2997 2998 2999Strain fitness (log2 ratio) -1 0 1at 2993.425 kb on - strand, within prfCat 2993.543 kb on - strand, within prfCat 2993.632 kb on - strand, within prfCat 2993.758 kb on - strand, within prfCat 2994.087 kb on - strandat 2994.342 kb on - strandat 2994.476 kb on + strandat 2994.694 kb on + strandat 2994.757 kb on + strandat 2994.897 kb on + strand, within DvMF_2373at 2995.213 kb on + strand, within DvMF_2373at 2995.318 kb on - strand, within DvMF_2373at 2995.369 kb on - strand, within DvMF_2373at 2995.430 kb on + strand, within DvMF_2373at 2995.495 kb on + strand, within DvMF_2373at 2995.842 kb on - strand, within DvMF_2373at 2995.959 kb on - strand, within DvMF_2373at 2995.981 kb on - strand, within DvMF_2373at 2995.983 kb on - strand, within DvMF_2373at 2996.375 kb on + strand, within DvMF_2373at 2996.400 kb on + strand, within DvMF_2373at 2996.477 kb on + strand, within DvMF_2373at 2996.493 kb on + strand, within DvMF_2373at 2996.750 kb on + strand, within DvMF_2373at 2996.846 kb on + strand, within DvMF_2373at 2997.073 kb on + strand, within DvMF_2373at 2997.075 kb on - strand, within DvMF_2373at 2997.081 kb on - strand, within DvMF_2373at 2997.081 kb on - strand, within DvMF_2373at 2997.081 kb on - strand, within DvMF_2373at 2997.175 kb on - strand, within DvMF_2373at 2997.233 kb on + strand, within DvMF_2373at 2997.269 kb on - strand, within DvMF_2373at 2997.293 kb on - strand, within DvMF_2373at 2997.295 kb on - strand, within DvMF_2373at 2997.400 kb on + strand, within DvMF_2373at 2997.522 kb on + strand, within DvMF_2373at 2997.687 kb on - strand, within DvMF_2373at 2997.756 kb on + strand, within DvMF_2373at 2997.764 kb on - strand, within DvMF_2373at 2997.938 kb on - strand, within DvMF_2373at 2997.986 kb on + strand, within DvMF_2373at 2998.109 kb on - strand, within DvMF_2373at 2998.195 kb on + strand, within DvMF_2373at 2998.429 kb on - strandat 2998.528 kb on - strandat 2998.667 kb on - strandat 2998.788 kb on + strandat 2998.850 kb on + strandat 2999.096 kb on + strand, within DvMF_2374at 2999.205 kb on + strand, within DvMF_2374at 2999.207 kb on - strand, within DvMF_2374at 2999.213 kb on - strand, within DvMF_2374at 2999.593 kb on + strand, within DvMF_2374at 2999.599 kb on + strand, within DvMF_2374at 2999.680 kb on + strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
2,993,425 - prfC DvMF_2372 0.60 -0.5
2,993,543 - prfC DvMF_2372 0.67 -0.4
2,993,632 - prfC DvMF_2372 0.73 -0.3
2,993,758 - prfC DvMF_2372 0.81 +0.5
2,994,087 - -0.4
2,994,342 - +0.1
2,994,476 + -0.4
2,994,694 + +0.1
2,994,757 + -0.5
2,994,897 + DvMF_2373 0.12 -0.1
2,995,213 + DvMF_2373 0.19 +0.5
2,995,318 - DvMF_2373 0.22 -0.3
2,995,369 - DvMF_2373 0.23 +0.0
2,995,430 + DvMF_2373 0.24 -0.2
2,995,495 + DvMF_2373 0.26 +0.3
2,995,842 - DvMF_2373 0.33 -0.4
2,995,959 - DvMF_2373 0.36 +0.1
2,995,981 - DvMF_2373 0.37 -0.3
2,995,983 - DvMF_2373 0.37 +0.2
2,996,375 + DvMF_2373 0.45 -0.2
2,996,400 + DvMF_2373 0.46 -0.8
2,996,477 + DvMF_2373 0.48 -0.0
2,996,493 + DvMF_2373 0.48 -0.7
2,996,750 + DvMF_2373 0.54 -0.2
2,996,846 + DvMF_2373 0.56 -0.8
2,997,073 + DvMF_2373 0.61 -0.2
2,997,075 - DvMF_2373 0.61 -0.8
2,997,081 - DvMF_2373 0.61 -0.4
2,997,081 - DvMF_2373 0.61 -0.4
2,997,081 - DvMF_2373 0.61 -0.3
2,997,175 - DvMF_2373 0.63 -0.2
2,997,233 + DvMF_2373 0.64 -0.3
2,997,269 - DvMF_2373 0.65 -1.0
2,997,293 - DvMF_2373 0.66 -0.2
2,997,295 - DvMF_2373 0.66 +0.3
2,997,400 + DvMF_2373 0.68 -0.3
2,997,522 + DvMF_2373 0.71 +0.4
2,997,687 - DvMF_2373 0.74 -0.1
2,997,756 + DvMF_2373 0.76 -0.1
2,997,764 - DvMF_2373 0.76 -0.3
2,997,938 - DvMF_2373 0.80 -0.3
2,997,986 + DvMF_2373 0.81 -0.2
2,998,109 - DvMF_2373 0.84 -0.2
2,998,195 + DvMF_2373 0.86 -0.1
2,998,429 - +0.1
2,998,528 - +0.3
2,998,667 - -0.3
2,998,788 + -0.4
2,998,850 + +0.1
2,999,096 + DvMF_2374 0.20 -0.4
2,999,205 + DvMF_2374 0.28 -0.6
2,999,207 - DvMF_2374 0.28 -0.4
2,999,213 - DvMF_2374 0.29 -0.3
2,999,593 + DvMF_2374 0.57 -0.6
2,999,599 + DvMF_2374 0.57 -0.4
2,999,680 + DvMF_2374 0.63 -0.3
2,999,699 - DvMF_2374 0.65 +0.3
2,999,699 - DvMF_2374 0.65 +0.2

Or see this region's nucleotide sequence