Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2260

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2258 and DvMF_2259 are separated by 137 nucleotidesDvMF_2259 and DvMF_2260 overlap by 4 nucleotidesDvMF_2260 and DvMF_2261 overlap by 13 nucleotides DvMF_2258: DvMF_2258 - hypothetical protein (RefSeq), at 2,837,899 to 2,838,387 _2258 DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349 _2259 DvMF_2260: DvMF_2260 - cobalamin synthesis protein P47K (RefSeq), at 2,839,346 to 2,840,125 _2260 DvMF_2261: DvMF_2261 - hypothetical protein (RefSeq), at 2,840,113 to 2,841,198 _2261 Position (kb) 2839 2840 2841Strain fitness (log2 ratio) -1 0 1at 2838.549 kb on - strandat 2838.666 kb on - strand, within DvMF_2259at 2838.740 kb on + strand, within DvMF_2259at 2838.810 kb on + strand, within DvMF_2259at 2838.994 kb on + strand, within DvMF_2259at 2839.052 kb on + strand, within DvMF_2259at 2839.052 kb on - strand, within DvMF_2259at 2839.179 kb on + strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.384 kb on + strandat 2839.416 kb on + strandat 2839.417 kb on + strandat 2839.474 kb on - strand, within DvMF_2260at 2839.576 kb on - strand, within DvMF_2260at 2839.605 kb on - strand, within DvMF_2260at 2839.615 kb on - strand, within DvMF_2260at 2839.619 kb on - strand, within DvMF_2260at 2839.619 kb on - strand, within DvMF_2260at 2839.851 kb on - strand, within DvMF_2260at 2839.860 kb on + strand, within DvMF_2260at 2839.901 kb on - strand, within DvMF_2260at 2839.927 kb on + strand, within DvMF_2260at 2840.029 kb on - strand, within DvMF_2260at 2840.233 kb on + strand, within DvMF_2261at 2840.509 kb on - strand, within DvMF_2261at 2840.811 kb on + strand, within DvMF_2261at 2840.843 kb on + strand, within DvMF_2261at 2840.993 kb on - strand, within DvMF_2261

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,838,549 - -0.5
2,838,666 - DvMF_2259 0.17 -0.6
2,838,740 + DvMF_2259 0.26 -0.1
2,838,810 + DvMF_2259 0.35 -0.3
2,838,994 + DvMF_2259 0.57 -0.3
2,839,052 + DvMF_2259 0.64 -0.2
2,839,052 - DvMF_2259 0.64 -0.0
2,839,179 + DvMF_2259 0.79 -0.4
2,839,187 - DvMF_2259 0.80 -0.1
2,839,187 - DvMF_2259 0.80 -0.9
2,839,384 + -0.2
2,839,416 + -0.7
2,839,417 + -0.8
2,839,474 - DvMF_2260 0.16 -0.4
2,839,576 - DvMF_2260 0.29 -0.4
2,839,605 - DvMF_2260 0.33 +0.6
2,839,615 - DvMF_2260 0.34 -0.1
2,839,619 - DvMF_2260 0.35 +0.4
2,839,619 - DvMF_2260 0.35 -0.4
2,839,851 - DvMF_2260 0.65 +0.1
2,839,860 + DvMF_2260 0.66 -0.2
2,839,901 - DvMF_2260 0.71 -0.5
2,839,927 + DvMF_2260 0.74 -0.3
2,840,029 - DvMF_2260 0.88 -0.4
2,840,233 + DvMF_2261 0.11 -0.8
2,840,509 - DvMF_2261 0.36 -0.4
2,840,811 + DvMF_2261 0.64 -0.4
2,840,843 + DvMF_2261 0.67 -0.2
2,840,993 - DvMF_2261 0.81 -0.1

Or see this region's nucleotide sequence