Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2254

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2253 and DvMF_2254 overlap by 10 nucleotidesDvMF_2254 and DvMF_2255 are separated by 71 nucleotidesDvMF_2255 and DvMF_2256 are separated by 426 nucleotides DvMF_2253: DvMF_2253 - Precorrin-8X methylmutase CbiC/CobH (RefSeq), at 2,832,064 to 2,832,801 _2253 DvMF_2254: DvMF_2254 - cobyrinic acid a,c-diamide synthase (RefSeq), at 2,832,792 to 2,834,408 _2254 DvMF_2255: DvMF_2255 - hypothetical protein (RefSeq), at 2,834,480 to 2,834,737 _2255 DvMF_2256: DvMF_2256 - transcriptional regulator, MucR family (RefSeq), at 2,835,164 to 2,835,556 _2256 Position (kb) 2832 2833 2834 2835Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2832.042 kb on - strandat 2832.062 kb on + strandat 2832.341 kb on + strand, within DvMF_2253at 2832.612 kb on - strand, within DvMF_2253at 2832.612 kb on - strand, within DvMF_2253at 2833.069 kb on - strand, within DvMF_2254at 2833.251 kb on + strand, within DvMF_2254at 2833.685 kb on + strand, within DvMF_2254at 2833.790 kb on + strand, within DvMF_2254at 2834.437 kb on + strandat 2834.858 kb on + strandat 2835.181 kb on + strandat 2835.269 kb on - strand, within DvMF_2256

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,832,042 - +0.5
2,832,062 + -0.5
2,832,341 + DvMF_2253 0.38 -3.8
2,832,612 - DvMF_2253 0.74 -2.9
2,832,612 - DvMF_2253 0.74 -3.5
2,833,069 - DvMF_2254 0.17 -3.9
2,833,251 + DvMF_2254 0.28 -2.1
2,833,685 + DvMF_2254 0.55 -2.7
2,833,790 + DvMF_2254 0.62 -2.3
2,834,437 + +0.1
2,834,858 + -0.4
2,835,181 + +0.3
2,835,269 - DvMF_2256 0.27 +0.1

Or see this region's nucleotide sequence