Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1848

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1846 and DvMF_1847 overlap by 8 nucleotidesDvMF_1847 and DvMF_1848 are separated by 8 nucleotidesDvMF_1848 and DvMF_1849 overlap by 4 nucleotidesDvMF_1849 and DvMF_1850 are separated by 15 nucleotides DvMF_1846: DvMF_1846 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 2,257,737 to 2,258,963 _1846 DvMF_1847: DvMF_1847 - polysaccharide deacetylase (RefSeq), at 2,258,956 to 2,259,897 _1847 DvMF_1848: DvMF_1848 - hypothetical protein (RefSeq), at 2,259,906 to 2,261,060 _1848 DvMF_1849: DvMF_1849 - Radical SAM domain protein (RefSeq), at 2,261,057 to 2,261,989 _1849 DvMF_1850: DvMF_1850 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,262,005 to 2,263,510 _1850 Position (kb) 2259 2260 2261 2262Strain fitness (log2 ratio) -1 0 1at 2259.039 kb on - strandat 2259.046 kb on - strandat 2259.345 kb on + strand, within DvMF_1847at 2259.348 kb on - strand, within DvMF_1847at 2259.628 kb on - strand, within DvMF_1847at 2259.714 kb on + strand, within DvMF_1847at 2259.757 kb on + strand, within DvMF_1847at 2259.803 kb on + strandat 2259.911 kb on + strandat 2259.947 kb on - strandat 2260.152 kb on + strand, within DvMF_1848at 2260.256 kb on + strand, within DvMF_1848at 2260.438 kb on - strand, within DvMF_1848at 2260.593 kb on + strand, within DvMF_1848at 2260.593 kb on + strand, within DvMF_1848at 2260.616 kb on + strand, within DvMF_1848at 2260.679 kb on - strand, within DvMF_1848at 2260.681 kb on + strand, within DvMF_1848at 2260.681 kb on + strand, within DvMF_1848at 2260.703 kb on + strand, within DvMF_1848at 2260.704 kb on - strand, within DvMF_1848at 2260.890 kb on - strand, within DvMF_1848at 2261.363 kb on + strand, within DvMF_1849at 2261.363 kb on - strand, within DvMF_1849at 2261.806 kb on + strand, within DvMF_1849at 2261.927 kb on + strandat 2261.964 kb on + strandat 2261.972 kb on - strandat 2261.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,259,039 - -0.5
2,259,046 - -0.4
2,259,345 + DvMF_1847 0.41 -0.2
2,259,348 - DvMF_1847 0.42 -0.5
2,259,628 - DvMF_1847 0.71 -0.4
2,259,714 + DvMF_1847 0.80 -0.7
2,259,757 + DvMF_1847 0.85 -0.8
2,259,803 + -0.2
2,259,911 + -0.5
2,259,947 - -0.2
2,260,152 + DvMF_1848 0.21 -0.8
2,260,256 + DvMF_1848 0.30 -0.6
2,260,438 - DvMF_1848 0.46 -0.8
2,260,593 + DvMF_1848 0.59 -0.1
2,260,593 + DvMF_1848 0.59 -0.6
2,260,616 + DvMF_1848 0.61 -0.3
2,260,679 - DvMF_1848 0.67 -1.1
2,260,681 + DvMF_1848 0.67 -1.0
2,260,681 + DvMF_1848 0.67 -0.7
2,260,703 + DvMF_1848 0.69 -0.7
2,260,704 - DvMF_1848 0.69 -0.7
2,260,890 - DvMF_1848 0.85 -0.8
2,261,363 + DvMF_1849 0.33 -0.6
2,261,363 - DvMF_1849 0.33 -0.7
2,261,806 + DvMF_1849 0.80 -0.8
2,261,927 + -0.9
2,261,964 + -0.3
2,261,972 - -0.6
2,261,972 - -0.4

Or see this region's nucleotide sequence