Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1758

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1756 and DvMF_1757 are separated by 252 nucleotidesDvMF_1757 and DvMF_1758 are separated by 288 nucleotidesDvMF_1758 and DvMF_1759 are separated by 216 nucleotides DvMF_1756: DvMF_1756 - hypothetical protein (RefSeq), at 2,145,131 to 2,145,946 _1756 DvMF_1757: DvMF_1757 - hypothetical protein (RefSeq), at 2,146,199 to 2,146,348 _1757 DvMF_1758: DvMF_1758 - UvrD/REP helicase (RefSeq), at 2,146,637 to 2,150,371 _1758 DvMF_1759: DvMF_1759 - hypothetical protein (RefSeq), at 2,150,588 to 2,151,784 _1759 Position (kb) 2146 2147 2148 2149 2150 2151Strain fitness (log2 ratio) -2 -1 0 1at 2145.822 kb on - strand, within DvMF_1756at 2145.822 kb on - strand, within DvMF_1756at 2145.897 kb on + strandat 2145.950 kb on - strandat 2146.134 kb on - strandat 2146.155 kb on - strandat 2146.190 kb on - strandat 2146.425 kb on - strandat 2146.541 kb on + strandat 2146.560 kb on - strandat 2146.609 kb on + strandat 2146.949 kb on - strandat 2146.949 kb on - strandat 2147.117 kb on - strand, within DvMF_1758at 2147.117 kb on - strand, within DvMF_1758at 2147.358 kb on + strand, within DvMF_1758at 2147.583 kb on + strand, within DvMF_1758at 2148.011 kb on + strand, within DvMF_1758at 2148.125 kb on - strand, within DvMF_1758at 2148.459 kb on + strand, within DvMF_1758at 2148.472 kb on + strand, within DvMF_1758at 2148.668 kb on - strand, within DvMF_1758at 2148.687 kb on + strand, within DvMF_1758at 2148.975 kb on + strand, within DvMF_1758at 2148.989 kb on + strand, within DvMF_1758at 2149.048 kb on + strand, within DvMF_1758at 2149.171 kb on - strand, within DvMF_1758at 2149.196 kb on + strand, within DvMF_1758at 2149.606 kb on - strand, within DvMF_1758at 2149.614 kb on - strand, within DvMF_1758at 2149.860 kb on + strand, within DvMF_1758at 2149.860 kb on + strand, within DvMF_1758at 2150.090 kb on + strandat 2150.301 kb on + strandat 2150.363 kb on - strandat 2150.442 kb on + strandat 2150.477 kb on - strandat 2150.735 kb on + strand, within DvMF_1759at 2150.735 kb on - strand, within DvMF_1759at 2150.921 kb on + strand, within DvMF_1759at 2150.955 kb on + strand, within DvMF_1759at 2151.034 kb on + strand, within DvMF_1759at 2151.338 kb on - strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,145,822 - DvMF_1756 0.85 -1.9
2,145,822 - DvMF_1756 0.85 -2.0
2,145,897 + -0.6
2,145,950 - -0.6
2,146,134 - -0.1
2,146,155 - -0.1
2,146,190 - -0.7
2,146,425 - -0.5
2,146,541 + -0.1
2,146,560 - -0.0
2,146,609 + -0.5
2,146,949 - -0.4
2,146,949 - -0.3
2,147,117 - DvMF_1758 0.13 -0.3
2,147,117 - DvMF_1758 0.13 -0.5
2,147,358 + DvMF_1758 0.19 -0.5
2,147,583 + DvMF_1758 0.25 -0.6
2,148,011 + DvMF_1758 0.37 -0.3
2,148,125 - DvMF_1758 0.40 -0.3
2,148,459 + DvMF_1758 0.49 +0.3
2,148,472 + DvMF_1758 0.49 +0.5
2,148,668 - DvMF_1758 0.54 -0.7
2,148,687 + DvMF_1758 0.55 -0.4
2,148,975 + DvMF_1758 0.63 -0.5
2,148,989 + DvMF_1758 0.63 -0.4
2,149,048 + DvMF_1758 0.65 -0.4
2,149,171 - DvMF_1758 0.68 -0.2
2,149,196 + DvMF_1758 0.69 -0.1
2,149,606 - DvMF_1758 0.79 -0.6
2,149,614 - DvMF_1758 0.80 -0.5
2,149,860 + DvMF_1758 0.86 -0.2
2,149,860 + DvMF_1758 0.86 -1.0
2,150,090 + -0.5
2,150,301 + -0.3
2,150,363 - -0.0
2,150,442 + -1.5
2,150,477 - -0.5
2,150,735 + DvMF_1759 0.12 -0.2
2,150,735 - DvMF_1759 0.12 -0.5
2,150,921 + DvMF_1759 0.28 -1.4
2,150,955 + DvMF_1759 0.31 -0.3
2,151,034 + DvMF_1759 0.37 -0.5
2,151,338 - DvMF_1759 0.63 -0.9
2,151,340 + DvMF_1759 0.63 -0.8
2,151,340 + DvMF_1759 0.63 +0.0
2,151,340 + DvMF_1759 0.63 -0.0

Or see this region's nucleotide sequence