Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1754

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1753 and DvMF_1754 are separated by 140 nucleotidesDvMF_1754 and DvMF_1755 are separated by 434 nucleotides DvMF_1753: DvMF_1753 - hypothetical protein (RefSeq), at 2,141,275 to 2,141,832 _1753 DvMF_1754: DvMF_1754 - diguanylate phosphodiesterase (RefSeq), at 2,141,973 to 2,143,268 _1754 DvMF_1755: DvMF_1755 - phosphoesterase RecJ domain protein (RefSeq), at 2,143,703 to 2,144,965 _1755 Position (kb) 2141 2142 2143 2144Strain fitness (log2 ratio) -1 0 1at 2141.194 kb on + strandat 2141.277 kb on + strandat 2141.285 kb on - strandat 2141.295 kb on - strandat 2141.295 kb on - strandat 2141.338 kb on + strand, within DvMF_1753at 2141.393 kb on + strand, within DvMF_1753at 2141.408 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.508 kb on - strand, within DvMF_1753at 2141.768 kb on - strand, within DvMF_1753at 2142.337 kb on + strand, within DvMF_1754at 2142.346 kb on + strand, within DvMF_1754at 2142.871 kb on - strand, within DvMF_1754at 2142.891 kb on + strand, within DvMF_1754at 2142.899 kb on - strand, within DvMF_1754at 2142.902 kb on + strand, within DvMF_1754at 2142.983 kb on - strand, within DvMF_1754at 2143.021 kb on - strand, within DvMF_1754at 2143.297 kb on + strandat 2143.305 kb on - strandat 2143.312 kb on + strandat 2143.335 kb on + strandat 2143.532 kb on - strandat 2143.544 kb on + strandat 2143.574 kb on + strandat 2143.576 kb on - strandat 2143.809 kb on + strandat 2144.059 kb on - strand, within DvMF_1755

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,141,194 + -0.3
2,141,277 + -0.3
2,141,285 - -0.5
2,141,295 - -0.2
2,141,295 - -1.0
2,141,338 + DvMF_1753 0.11 -0.5
2,141,393 + DvMF_1753 0.21 +0.0
2,141,408 + DvMF_1753 0.24 -0.1
2,141,500 + DvMF_1753 0.40 -0.3
2,141,500 + DvMF_1753 0.40 -0.5
2,141,500 + DvMF_1753 0.40 -0.2
2,141,500 + DvMF_1753 0.40 -0.4
2,141,508 - DvMF_1753 0.42 -0.3
2,141,768 - DvMF_1753 0.88 -0.1
2,142,337 + DvMF_1754 0.28 -0.1
2,142,346 + DvMF_1754 0.29 -0.5
2,142,871 - DvMF_1754 0.69 -0.6
2,142,891 + DvMF_1754 0.71 -0.5
2,142,899 - DvMF_1754 0.71 -0.1
2,142,902 + DvMF_1754 0.72 -1.3
2,142,983 - DvMF_1754 0.78 -0.2
2,143,021 - DvMF_1754 0.81 -0.8
2,143,297 + +0.4
2,143,305 - -0.3
2,143,312 + -0.2
2,143,335 + -0.4
2,143,532 - -0.1
2,143,544 + -0.3
2,143,574 + -0.4
2,143,576 - -0.6
2,143,809 + -0.4
2,144,059 - DvMF_1755 0.28 -0.4

Or see this region's nucleotide sequence