Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0948

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0947 and DvMF_0948 are separated by 429 nucleotidesDvMF_0948 and DvMF_0949 are separated by 159 nucleotides DvMF_0947: DvMF_0947 - thioesterase superfamily protein (RefSeq), at 1,148,506 to 1,148,973 _0947 DvMF_0948: DvMF_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,149,403 to 1,151,166 _0948 DvMF_0949: DvMF_0949 - hypothetical protein (RefSeq), at 1,151,326 to 1,152,135 _0949 Position (kb) 1149 1150 1151 1152Strain fitness (log2 ratio) -1 0 1at 1148.444 kb on + strandat 1148.488 kb on + strandat 1148.568 kb on - strand, within DvMF_0947at 1149.065 kb on + strandat 1149.222 kb on - strandat 1149.401 kb on - strandat 1150.024 kb on + strand, within DvMF_0948at 1150.027 kb on - strand, within DvMF_0948at 1150.032 kb on - strand, within DvMF_0948at 1150.032 kb on - strand, within DvMF_0948at 1150.061 kb on - strand, within DvMF_0948at 1150.276 kb on - strand, within DvMF_0948at 1150.296 kb on + strand, within DvMF_0948at 1150.321 kb on + strand, within DvMF_0948at 1150.385 kb on + strand, within DvMF_0948at 1150.406 kb on + strand, within DvMF_0948at 1150.530 kb on - strand, within DvMF_0948at 1150.582 kb on + strand, within DvMF_0948at 1150.837 kb on + strand, within DvMF_0948at 1150.845 kb on - strand, within DvMF_0948at 1150.845 kb on - strand, within DvMF_0948at 1150.845 kb on - strand, within DvMF_0948at 1150.925 kb on + strand, within DvMF_0948at 1151.287 kb on + strandat 1151.563 kb on - strand, within DvMF_0949at 1151.659 kb on + strand, within DvMF_0949at 1151.896 kb on + strand, within DvMF_0949at 1151.983 kb on - strand, within DvMF_0949at 1152.057 kb on + strandat 1152.150 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
1,148,444 + +0.5
1,148,488 + -0.4
1,148,568 - DvMF_0947 0.13 -1.5
1,149,065 + +0.3
1,149,222 - -0.4
1,149,401 - -0.5
1,150,024 + DvMF_0948 0.35 -0.3
1,150,027 - DvMF_0948 0.35 +0.2
1,150,032 - DvMF_0948 0.36 -0.4
1,150,032 - DvMF_0948 0.36 +0.6
1,150,061 - DvMF_0948 0.37 +0.0
1,150,276 - DvMF_0948 0.49 -1.7
1,150,296 + DvMF_0948 0.51 +0.2
1,150,321 + DvMF_0948 0.52 -0.8
1,150,385 + DvMF_0948 0.56 -1.0
1,150,406 + DvMF_0948 0.57 -0.1
1,150,530 - DvMF_0948 0.64 -0.3
1,150,582 + DvMF_0948 0.67 -0.3
1,150,837 + DvMF_0948 0.81 -0.9
1,150,845 - DvMF_0948 0.82 -0.2
1,150,845 - DvMF_0948 0.82 -0.3
1,150,845 - DvMF_0948 0.82 -0.1
1,150,925 + DvMF_0948 0.86 +0.1
1,151,287 + -0.6
1,151,563 - DvMF_0949 0.29 -0.2
1,151,659 + DvMF_0949 0.41 +0.2
1,151,896 + DvMF_0949 0.70 -0.7
1,151,983 - DvMF_0949 0.81 -0.6
1,152,057 + -0.3
1,152,150 - -0.0

Or see this region's nucleotide sequence