Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4108 and Shewana3_4109 are separated by 385 nucleotides Shewana3_4109 and engB are separated by 977 nucleotides
Shewana3_4108: Shewana3_4108 - isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq), at 4,930,273 to 4,930,929
_4108
Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083
_4109
Shewana3_4110: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 4,935,061 to 4,935,720
engB
Position (kb)
4931
4932
4933
4934
4935 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4930.347 kb on + strand, within Shewana3_4108 at 4930.397 kb on - strand, within Shewana3_4108 at 4930.397 kb on - strand, within Shewana3_4108 at 4930.404 kb on - strand, within Shewana3_4108 at 4930.414 kb on - strand, within Shewana3_4108 at 4930.443 kb on - strand, within Shewana3_4108 at 4930.477 kb on - strand, within Shewana3_4108 at 4930.652 kb on + strand, within Shewana3_4108 at 4930.652 kb on + strand, within Shewana3_4108 at 4930.653 kb on + strand, within Shewana3_4108 at 4930.722 kb on - strand, within Shewana3_4108 at 4931.219 kb on + strand at 4932.801 kb on + strand, within Shewana3_4109 at 4934.223 kb on - strand at 4934.363 kb on + strand at 4934.373 kb on + strand at 4934.393 kb on - strand at 4934.639 kb on + strand at 4934.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,930,347 + Shewana3_4108 0.11 +0.1 4,930,397 - Shewana3_4108 0.19 -1.6 4,930,397 - Shewana3_4108 0.19 +0.1 4,930,404 - Shewana3_4108 0.20 -1.3 4,930,414 - Shewana3_4108 0.21 +0.3 4,930,443 - Shewana3_4108 0.26 +0.0 4,930,477 - Shewana3_4108 0.31 +0.2 4,930,652 + Shewana3_4108 0.58 -1.4 4,930,652 + Shewana3_4108 0.58 -1.7 4,930,653 + Shewana3_4108 0.58 +0.4 4,930,722 - Shewana3_4108 0.68 -1.8 4,931,219 + -2.1 4,932,801 + Shewana3_4109 0.54 -2.8 4,934,223 - +0.2 4,934,363 + -2.4 4,934,373 + +1.2 4,934,393 - +0.5 4,934,639 + -1.6 4,934,663 + +0.7
Or see this region's nucleotide sequence