Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4094

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,915,528	+				+0.1
4,915,612	+		Shewana3_4093	0.18	+0.5
4,915,620	-		Shewana3_4093	0.18	-1.8
4,915,886	+		Shewana3_4093	0.43	-0.2
4,915,894	-		Shewana3_4093	0.44	+0.3
4,915,937	-		Shewana3_4093	0.48	+0.3
4,915,939	-		Shewana3_4093	0.48	-1.4
4,915,969	-		Shewana3_4093	0.51	-1.3
4,916,000	+		Shewana3_4093	0.54	-0.1
4,916,068	+		Shewana3_4093	0.60	+0.4
4,916,076	-		Shewana3_4093	0.61	-0.2
4,916,083	+		Shewana3_4093	0.62	-1.7
4,916,146	-		Shewana3_4093	0.68	-1.5
4,916,156	-		Shewana3_4093	0.69	+0.1
4,916,192	+		Shewana3_4093	0.72	-0.9
4,916,217	+		Shewana3_4093	0.74	-0.0
4,916,217	+		Shewana3_4093	0.74	+0.9
4,916,217	+		Shewana3_4093	0.74	+0.5
4,916,217	+		Shewana3_4093	0.74	+0.6
4,916,249	-		Shewana3_4093	0.77	-0.9
4,916,249	-		Shewana3_4093	0.77	+0.3
4,916,264	+		Shewana3_4093	0.79	+0.7
4,916,275	+		Shewana3_4093	0.80	+0.3
4,916,275	+		Shewana3_4093	0.80	-0.1
4,916,278	+		Shewana3_4093	0.80	+0.7
4,916,283	-		Shewana3_4093	0.80	-1.2
4,916,288	+		Shewana3_4093	0.81	-1.5
4,916,288	+		Shewana3_4093	0.81	-1.4
4,916,288	+		Shewana3_4093	0.81	-0.2
4,916,288	+		Shewana3_4093	0.81	-0.1
4,916,288	+		Shewana3_4093	0.81	-0.7
4,916,293	+		Shewana3_4093	0.81	-1.3
4,916,296	-		Shewana3_4093	0.82	+0.5
4,916,296	-		Shewana3_4093	0.82	+0.2
4,916,296	-		Shewana3_4093	0.82	-1.8
4,916,296	-		Shewana3_4093	0.82	+0.1
4,916,296	-		Shewana3_4093	0.82	+0.8
4,916,311	+		Shewana3_4093	0.83	+0.2
4,916,360	+		Shewana3_4093	0.88	+0.0
4,916,367	+		Shewana3_4093	0.88	+0.4
4,916,387	-				+0.2
4,916,388	+				+0.4
4,916,388	+				-0.7
4,916,388	+				-1.2
4,916,396	+				+0.3
4,916,396	-				-1.9
4,916,396	-				+0.1
4,916,396	-				+0.4
4,916,415	+				+0.4
4,916,415	+				+0.1
4,916,415	+				+0.4
4,916,416	+				-0.2
4,916,423	-				-1.6
4,916,423	-				-1.4
4,916,423	-				+0.4
4,916,423	-				+0.2
4,916,423	-				+0.4
4,916,423	-				+0.3
4,916,423	-				+0.0
4,916,423	-				+0.4
4,916,442	+				-0.8
4,916,442	+				+0.3
4,916,443	-				-1.2
4,916,452	+				-0.1
4,916,501	+				+0.4
4,916,552	+				+0.2
4,916,555	+				+0.3
4,916,555	+				-1.1
4,916,563	-		Shewana3_4094	0.10	+1.2
4,916,563	-		Shewana3_4094	0.10	-1.6
4,916,563	-		Shewana3_4094	0.10	+1.0
4,916,564	-		Shewana3_4094	0.10	+0.3
4,916,565	+		Shewana3_4094	0.11	-0.7
4,916,565	+		Shewana3_4094	0.11	-2.5
4,916,565	+		Shewana3_4094	0.11	-1.1
4,916,565	+		Shewana3_4094	0.11	+0.3
4,916,565	+		Shewana3_4094	0.11	-1.8
4,916,573	-		Shewana3_4094	0.13	+0.7
4,916,573	-		Shewana3_4094	0.13	-1.7
4,916,573	-		Shewana3_4094	0.13	-1.5
4,916,595	+		Shewana3_4094	0.19	-0.9
4,916,619	+		Shewana3_4094	0.25	-2.0
4,916,642	+		Shewana3_4094	0.31	+0.0
4,916,787	-		Shewana3_4094	0.69	+0.1
4,916,889	+				+0.3
4,916,914	+				+0.7
4,916,914	+				+0.9
4,916,914	+				+0.3
4,916,922	-				+0.5
4,916,922	-				+0.4
4,916,933	+				-1.8
4,916,941	-				-0.9
4,916,945	+				+0.1
4,916,965	+				-2.6
4,916,965	+				+0.4
4,916,973	+				+0.2
4,916,973	-				-0.0
4,917,031	+				+0.1
4,917,031	+				-1.2
4,917,031	+				-1.8
4,917,031	+				-1.2
4,917,063	-		Shewana3_4095	0.11	+1.0
4,917,074	+		Shewana3_4095	0.11	-2.3
4,917,079	+		Shewana3_4095	0.12	-1.6
4,917,082	-		Shewana3_4095	0.12	+0.3
4,917,082	-		Shewana3_4095	0.12	+0.4
4,917,120	+		Shewana3_4095	0.14	-2.1
4,917,120	+		Shewana3_4095	0.14	+0.4
4,917,120	+		Shewana3_4095	0.14	+0.4
4,917,120	+		Shewana3_4095	0.14	+0.7
4,917,128	-		Shewana3_4095	0.15	+0.4
4,917,129	-		Shewana3_4095	0.15	-0.9
4,917,129	-		Shewana3_4095	0.15	-1.6
4,917,147	+		Shewana3_4095	0.16	-0.5
4,917,147	+		Shewana3_4095	0.16	-2.3
4,917,147	+		Shewana3_4095	0.16	+0.3
4,917,150	-		Shewana3_4095	0.16	-0.5
4,917,155	-		Shewana3_4095	0.17	+0.5
4,917,156	+		Shewana3_4095	0.17	+0.5
4,917,156	+		Shewana3_4095	0.17	-0.0
4,917,156	+		Shewana3_4095	0.17	+0.5
4,917,164	-		Shewana3_4095	0.17	+0.3
4,917,164	-		Shewana3_4095	0.17	-1.2
4,917,171	+		Shewana3_4095	0.18	-1.3
4,917,218	+		Shewana3_4095	0.21	-0.1
4,917,222	-		Shewana3_4095	0.21	+0.5
4,917,229	+		Shewana3_4095	0.21	-0.2
4,917,237	-		Shewana3_4095	0.22	+0.4
4,917,257	+		Shewana3_4095	0.23	+0.4
4,917,265	-		Shewana3_4095	0.24	-0.1
4,917,274	+		Shewana3_4095	0.24	+0.0
4,917,281	-		Shewana3_4095	0.25	+0.2
4,917,332	+		Shewana3_4095	0.28	-1.8
4,917,396	-		Shewana3_4095	0.32	-0.3
4,917,415	+		Shewana3_4095	0.33	-0.0
4,917,485	+		Shewana3_4095	0.38	+0.6
4,917,493	-		Shewana3_4095	0.38	+0.5
4,917,503	+		Shewana3_4095	0.39	+0.4
4,917,524	+		Shewana3_4095	0.40	-1.6
4,917,532	-		Shewana3_4095	0.41	+0.2
4,917,532	-		Shewana3_4095	0.41	+0.2
4,917,594	+		Shewana3_4095	0.45	-0.0
4,917,613	+		Shewana3_4095	0.46	+0.0
4,917,613	+		Shewana3_4095	0.46	-1.1
4,917,613	+		Shewana3_4095	0.46	-1.7
4,917,635	+		Shewana3_4095	0.47	+0.5
4,917,635	+		Shewana3_4095	0.47	+0.5
4,917,635	+		Shewana3_4095	0.47	+0.8
4,917,635	+		Shewana3_4095	0.47	+0.4
4,917,635	+		Shewana3_4095	0.47	+0.1
4,917,640	+		Shewana3_4095	0.48	+0.1
4,917,643	-		Shewana3_4095	0.48	+1.1
4,917,649	-		Shewana3_4095	0.48	-1.6
4,917,650	-		Shewana3_4095	0.48	+0.4
4,917,662	+		Shewana3_4095	0.49	+0.5
4,917,700	-		Shewana3_4095	0.51	+0.0
4,917,708	-		Shewana3_4095	0.52	+0.7
4,917,708	-		Shewana3_4095	0.52	-0.9
4,917,708	-		Shewana3_4095	0.52	+0.4
4,917,708	-		Shewana3_4095	0.52	+0.5
4,917,806	+		Shewana3_4095	0.58	-0.9
4,917,806	+		Shewana3_4095	0.58	+0.0