Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3728

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3727 and Shewana3_3728 are separated by 59 nucleotidesShewana3_3728 and Shewana3_3729 are separated by 6 nucleotidesShewana3_3729 and Shewana3_3730 are separated by 3 nucleotides Shewana3_3727: Shewana3_3727 - 2-octaprenylphenol hydroxylase (RefSeq), at 4,469,495 to 4,471,144 _3727 Shewana3_3728: Shewana3_3728 - twin arginine-targeting protein translocase (RefSeq), at 4,471,204 to 4,471,461 _3728 Shewana3_3729: Shewana3_3729 - twin-arginine translocation protein, TatB subunit (RefSeq), at 4,471,468 to 4,471,911 _3729 Shewana3_3730: Shewana3_3730 - Sec-independent protein translocase TatC (RefSeq), at 4,471,915 to 4,472,664 _3730 Position (kb) 4471 4472Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4471.130 kb on - strandat 4471.354 kb on + strand, within Shewana3_3728at 4471.486 kb on - strandat 4471.958 kb on + strandat 4472.257 kb on - strand, within Shewana3_3730

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,471,130 - -2.5
4,471,354 + Shewana3_3728 0.58 -3.0
4,471,486 - -3.7
4,471,958 + -4.4
4,472,257 - Shewana3_3730 0.46 -4.4

Or see this region's nucleotide sequence