Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3105

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3103 and Shewana3_3104 are separated by 145 nucleotidesShewana3_3104 and Shewana3_3105 are separated by 165 nucleotidesShewana3_3105 and Shewana3_3106 are separated by 280 nucleotides Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867 _3103 Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408 _3104 Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070 _3105 Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691 _3106 Position (kb) 3723 3724 3725 3726Strain fitness (log2 ratio) -2 -1 0 1at 3722.644 kb on + strand, within Shewana3_3103at 3722.662 kb on - strand, within Shewana3_3103at 3722.747 kb on + strand, within Shewana3_3103at 3722.786 kb on - strandat 3722.830 kb on + strandat 3722.848 kb on - strandat 3722.949 kb on + strandat 3723.072 kb on + strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.473 kb on + strandat 3723.491 kb on - strandat 3723.772 kb on - strand, within Shewana3_3105at 3723.854 kb on + strand, within Shewana3_3105at 3724.173 kb on - strand, within Shewana3_3105at 3724.240 kb on - strand, within Shewana3_3105at 3724.255 kb on + strand, within Shewana3_3105at 3724.273 kb on - strand, within Shewana3_3105at 3724.424 kb on + strand, within Shewana3_3105at 3724.424 kb on + strand, within Shewana3_3105at 3724.514 kb on + strand, within Shewana3_3105at 3724.599 kb on - strand, within Shewana3_3105at 3724.871 kb on - strand, within Shewana3_3105at 3724.871 kb on - strand, within Shewana3_3105at 3724.997 kb on + strandat 3725.158 kb on + strandat 3725.171 kb on + strandat 3725.251 kb on - strandat 3725.317 kb on - strandat 3725.317 kb on - strandat 3725.371 kb on - strandat 3725.501 kb on + strand, within Shewana3_3106at 3725.672 kb on - strand, within Shewana3_3106at 3725.706 kb on - strand, within Shewana3_3106at 3725.787 kb on + strand, within Shewana3_3106at 3725.797 kb on + strand, within Shewana3_3106at 3725.883 kb on + strand, within Shewana3_3106at 3725.912 kb on - strand, within Shewana3_3106at 3725.969 kb on + strand, within Shewana3_3106at 3725.970 kb on + strand, within Shewana3_3106at 3725.990 kb on + strand, within Shewana3_3106at 3725.990 kb on + strand, within Shewana3_3106

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,722,644 + Shewana3_3103 0.74 +0.1
3,722,662 - Shewana3_3103 0.76 -1.2
3,722,747 + Shewana3_3103 0.86 +0.4
3,722,786 - +0.8
3,722,830 + -2.4
3,722,848 - +0.4
3,722,949 + -0.5
3,723,072 + Shewana3_3104 0.15 +0.3
3,723,145 - Shewana3_3104 0.33 +0.7
3,723,145 - Shewana3_3104 0.33 +0.5
3,723,473 + -1.9
3,723,491 - +0.3
3,723,772 - Shewana3_3105 0.13 +0.1
3,723,854 + Shewana3_3105 0.19 +0.8
3,724,173 - Shewana3_3105 0.40 +0.4
3,724,240 - Shewana3_3105 0.44 -1.7
3,724,255 + Shewana3_3105 0.45 -1.4
3,724,273 - Shewana3_3105 0.47 +0.2
3,724,424 + Shewana3_3105 0.57 +0.6
3,724,424 + Shewana3_3105 0.57 -1.0
3,724,514 + Shewana3_3105 0.63 +0.5
3,724,599 - Shewana3_3105 0.68 +0.6
3,724,871 - Shewana3_3105 0.87 +0.4
3,724,871 - Shewana3_3105 0.87 +0.1
3,724,997 + -0.9
3,725,158 + +0.3
3,725,171 + +0.4
3,725,251 - +0.1
3,725,317 - -1.7
3,725,317 - -0.5
3,725,371 - -0.8
3,725,501 + Shewana3_3106 0.11 -0.3
3,725,672 - Shewana3_3106 0.24 +0.7
3,725,706 - Shewana3_3106 0.26 +0.5
3,725,787 + Shewana3_3106 0.33 +0.4
3,725,797 + Shewana3_3106 0.33 +0.9
3,725,883 + Shewana3_3106 0.40 +0.8
3,725,912 - Shewana3_3106 0.42 -1.6
3,725,969 + Shewana3_3106 0.46 -1.1
3,725,970 + Shewana3_3106 0.46 -1.1
3,725,990 + Shewana3_3106 0.48 -1.0
3,725,990 + Shewana3_3106 0.48 +0.3

Or see this region's nucleotide sequence