Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3086 and Shewana3_3087 are separated by 126 nucleotides Shewana3_3087 and Shewana3_R0117 are separated by 289 nucleotides Shewana3_R0117 and Shewana3_3088 are separated by 227 nucleotides
Shewana3_3086: Shewana3_3086 - DNA primase (RefSeq), at 3,697,709 to 3,699,433
_3086
Shewana3_3087: Shewana3_3087 - RNA polymerase, sigma 70 subunit, RpoD (RefSeq), at 3,699,560 to 3,701,419
_3087
Shewana3_R0117: Shewana3_R0117 - tRNA-Met (RefSeq), at 3,701,709 to 3,701,785
_R0117
Shewana3_3088: Shewana3_3088 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,702,013 to 3,704,133
_3088
Position (kb)
3699
3700
3701
3702 Strain fitness (log2 ratio)
-1
0
1 at 3701.881 kb on + strand at 3701.996 kb on + strand at 3701.996 kb on + strand at 3701.996 kb on + strand at 3701.996 kb on + strand at 3701.996 kb on + strand at 3702.004 kb on - strand at 3702.004 kb on - strand at 3702.004 kb on - strand at 3702.004 kb on - strand at 3702.004 kb on - strand at 3702.076 kb on + strand at 3702.298 kb on + strand, within Shewana3_3088 at 3702.354 kb on - strand, within Shewana3_3088
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,701,881 + +0.7 3,701,996 + +0.3 3,701,996 + +0.7 3,701,996 + +0.7 3,701,996 + +0.3 3,701,996 + -1.2 3,702,004 - +0.3 3,702,004 - +0.4 3,702,004 - +0.4 3,702,004 - +0.6 3,702,004 - -0.1 3,702,076 + +0.6 3,702,298 + Shewana3_3088 0.13 +0.4 3,702,354 - Shewana3_3088 0.16 +0.2
Or see this region's nucleotide sequence