Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3018

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrimM and rpsP are separated by 20 nucleotidesrpsP and Shewana3_3018 are separated by 218 nucleotidesShewana3_3018 and Shewana3_3019 are separated by 288 nucleotides Shewana3_3016: rimM - 16S rRNA-processing protein RimM (RefSeq), at 3,622,837 to 3,623,367 rimM Shewana3_3017: rpsP - 30S ribosomal protein S16 (RefSeq), at 3,623,388 to 3,623,636 rpsP Shewana3_3018: Shewana3_3018 - signal recognition particle protein (RefSeq), at 3,623,855 to 3,625,228 _3018 Shewana3_3019: Shewana3_3019 - cytochrome c assembly protein (RefSeq), at 3,625,517 to 3,626,305 _3019 Position (kb) 3623 3624 3625 3626Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3625.361 kb on + strandat 3625.486 kb on + strandat 3625.585 kb on + strandat 3625.796 kb on + strand, within Shewana3_3019at 3625.818 kb on + strand, within Shewana3_3019at 3625.892 kb on + strand, within Shewana3_3019at 3625.902 kb on + strandat 3625.932 kb on - strand, within Shewana3_3019at 3626.191 kb on + strand, within Shewana3_3019at 3626.191 kb on + strand, within Shewana3_3019

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,625,361 + -0.0
3,625,486 + -2.2
3,625,585 + -4.1
3,625,796 + Shewana3_3019 0.35 -3.9
3,625,818 + Shewana3_3019 0.38 -1.9
3,625,892 + Shewana3_3019 0.48 -4.3
3,625,902 + -1.1
3,625,932 - Shewana3_3019 0.53 -2.8
3,626,191 + Shewana3_3019 0.85 -3.0
3,626,191 + Shewana3_3019 0.85 -3.5

Or see this region's nucleotide sequence