Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2897

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2896 and motB are separated by 216 nucleotidesmotB and Shewana3_2898 are separated by 3 nucleotides Shewana3_2896: Shewana3_2896 - thiamine biosynthesis protein ThiI (RefSeq), at 3,465,148 to 3,466,602 _2896 Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739 motB Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510 _2898 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -1 0 1 2 3 4at 3466.095 kb on - strand, within Shewana3_2896at 3466.095 kb on - strand, within Shewana3_2896at 3466.341 kb on + strand, within Shewana3_2896at 3466.419 kb on - strand, within Shewana3_2896at 3466.567 kb on - strandat 3466.731 kb on - strandat 3466.739 kb on - strandat 3466.861 kb on - strandat 3466.900 kb on + strandat 3466.931 kb on - strand, within motBat 3467.033 kb on - strand, within motBat 3467.054 kb on + strand, within motBat 3467.149 kb on - strand, within motBat 3467.149 kb on - strand, within motBat 3467.297 kb on + strand, within motBat 3467.546 kb on - strand, within motBat 3467.615 kb on - strand, within motBat 3467.662 kb on + strandat 3467.838 kb on - strand, within Shewana3_2898at 3467.952 kb on - strand, within Shewana3_2898at 3468.037 kb on + strand, within Shewana3_2898at 3468.156 kb on - strand, within Shewana3_2898at 3468.286 kb on + strand, within Shewana3_2898at 3468.455 kb on + strandat 3468.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,466,095 - Shewana3_2896 0.65 +0.1
3,466,095 - Shewana3_2896 0.65 +0.3
3,466,341 + Shewana3_2896 0.82 -0.5
3,466,419 - Shewana3_2896 0.87 +0.5
3,466,567 - +0.5
3,466,731 - -0.2
3,466,739 - +0.3
3,466,861 - -1.0
3,466,900 + -0.8
3,466,931 - motB Shewana3_2897 0.12 +1.5
3,467,033 - motB Shewana3_2897 0.23 -0.9
3,467,054 + motB Shewana3_2897 0.26 +1.8
3,467,149 - motB Shewana3_2897 0.36 +2.0
3,467,149 - motB Shewana3_2897 0.36 +1.5
3,467,297 + motB Shewana3_2897 0.52 +1.8
3,467,546 - motB Shewana3_2897 0.79 -0.4
3,467,615 - motB Shewana3_2897 0.86 -0.6
3,467,662 + +1.5
3,467,838 - Shewana3_2898 0.12 -0.3
3,467,952 - Shewana3_2898 0.27 +2.1
3,468,037 + Shewana3_2898 0.38 +1.1
3,468,156 - Shewana3_2898 0.54 +1.2
3,468,286 + Shewana3_2898 0.71 +1.3
3,468,455 + +4.0
3,468,463 - +1.9

Or see this region's nucleotide sequence