Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2629

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2628 and Shewana3_2629 are separated by 220 nucleotidesShewana3_2629 and dinG are separated by 140 nucleotides Shewana3_2628: Shewana3_2628 - porin (RefSeq), at 3,134,873 to 3,136,081 _2628 Shewana3_2629: Shewana3_2629 - DNA polymerase II (RefSeq), at 3,136,302 to 3,138,734 _2629 Shewana3_2630: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 3,138,875 to 3,140,947 dinG Position (kb) 3136 3137 3138 3139Strain fitness (log2 ratio) -3 -2 -1 0 1at 3135.375 kb on - strand, within Shewana3_2628at 3135.661 kb on + strand, within Shewana3_2628at 3135.676 kb on - strand, within Shewana3_2628at 3135.698 kb on - strand, within Shewana3_2628at 3135.713 kb on - strand, within Shewana3_2628at 3136.170 kb on + strandat 3136.246 kb on - strandat 3136.586 kb on - strand, within Shewana3_2629at 3136.825 kb on - strand, within Shewana3_2629at 3137.018 kb on - strand, within Shewana3_2629at 3137.253 kb on - strand, within Shewana3_2629at 3137.263 kb on - strand, within Shewana3_2629at 3137.333 kb on - strand, within Shewana3_2629at 3137.401 kb on - strand, within Shewana3_2629at 3137.480 kb on - strand, within Shewana3_2629at 3137.676 kb on - strand, within Shewana3_2629at 3137.676 kb on - strand, within Shewana3_2629at 3137.975 kb on + strand, within Shewana3_2629at 3137.975 kb on + strand, within Shewana3_2629at 3137.982 kb on + strand, within Shewana3_2629at 3138.031 kb on - strand, within Shewana3_2629at 3138.031 kb on - strand, within Shewana3_2629at 3138.426 kb on + strand, within Shewana3_2629at 3138.580 kb on - strandat 3138.619 kb on + strandat 3138.646 kb on - strandat 3139.010 kb on + strandat 3139.162 kb on - strand, within dinGat 3139.627 kb on - strand, within dinG

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,135,375 - Shewana3_2628 0.42 +0.1
3,135,661 + Shewana3_2628 0.65 -0.3
3,135,676 - Shewana3_2628 0.66 -0.2
3,135,698 - Shewana3_2628 0.68 +0.3
3,135,713 - Shewana3_2628 0.69 +0.3
3,136,170 + -1.3
3,136,246 - -1.1
3,136,586 - Shewana3_2629 0.12 -1.7
3,136,825 - Shewana3_2629 0.21 +0.3
3,137,018 - Shewana3_2629 0.29 +0.2
3,137,253 - Shewana3_2629 0.39 -1.2
3,137,263 - Shewana3_2629 0.39 +0.9
3,137,333 - Shewana3_2629 0.42 +0.2
3,137,401 - Shewana3_2629 0.45 -3.0
3,137,480 - Shewana3_2629 0.48 +0.5
3,137,676 - Shewana3_2629 0.56 +0.5
3,137,676 - Shewana3_2629 0.56 +0.4
3,137,975 + Shewana3_2629 0.69 -1.9
3,137,975 + Shewana3_2629 0.69 +0.2
3,137,982 + Shewana3_2629 0.69 +0.1
3,138,031 - Shewana3_2629 0.71 -2.3
3,138,031 - Shewana3_2629 0.71 +0.2
3,138,426 + Shewana3_2629 0.87 -1.6
3,138,580 - -0.8
3,138,619 + +0.8
3,138,646 - +0.1
3,139,010 + +0.1
3,139,162 - dinG Shewana3_2630 0.14 +0.7
3,139,627 - dinG Shewana3_2630 0.36 +1.0

Or see this region's nucleotide sequence