Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2625

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2622 and Shewana3_2623 are separated by 1 nucleotidesShewana3_2623 and Shewana3_2624 are separated by 13 nucleotidesShewana3_2624 and Shewana3_2625 overlap by 1 nucleotidesShewana3_2625 and Shewana3_2626 overlap by 1 nucleotides Shewana3_2622: Shewana3_2622 - TonB family protein (RefSeq), at 3,127,486 to 3,128,109 _2622 Shewana3_2623: Shewana3_2623 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,128,111 to 3,128,515 _2623 Shewana3_2624: Shewana3_2624 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,128,529 to 3,129,056 _2624 Shewana3_2625: Shewana3_2625 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,129,056 to 3,130,411 _2625 Shewana3_2626: Shewana3_2626 - hypothetical protein (RefSeq), at 3,130,411 to 3,131,193 _2626 Position (kb) 3129 3130 3131Strain fitness (log2 ratio) -1 0 1at 3131.398 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
3,131,398 + +0.6

Or see this region's nucleotide sequence