Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2107 and Shewana3_2108 are separated by 12 nucleotides Shewana3_2108 and Shewana3_2109 are separated by 11 nucleotides Shewana3_2109 and Shewana3_2110 overlap by 1 nucleotides
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657
_2108
Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845
_2109
Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813
_2110
Position (kb)
2533
2534 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.215 kb on + strand, within Shewana3_2107 at 2532.266 kb on + strand, within Shewana3_2107 at 2532.364 kb on - strand, within Shewana3_2107 at 2532.436 kb on + strand, within Shewana3_2107 at 2532.498 kb on - strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.798 kb on + strand, within Shewana3_2107 at 2532.884 kb on - strand at 2533.028 kb on - strand at 2533.174 kb on + strand, within Shewana3_2108 at 2533.450 kb on - strand, within Shewana3_2108 at 2533.853 kb on + strand at 2533.890 kb on - strand at 2533.924 kb on + strand at 2533.972 kb on + strand, within Shewana3_2110 at 2534.067 kb on - strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.353 kb on - strand, within Shewana3_2110 at 2534.388 kb on - strand, within Shewana3_2110 at 2534.528 kb on + strand, within Shewana3_2110 at 2534.596 kb on + strand, within Shewana3_2110
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,532,124 + Shewana3_2107 0.38 -3.0 2,532,124 + Shewana3_2107 0.38 -4.6 2,532,215 + Shewana3_2107 0.44 -2.2 2,532,266 + Shewana3_2107 0.48 -4.6 2,532,364 - Shewana3_2107 0.54 -3.1 2,532,436 + Shewana3_2107 0.59 -2.9 2,532,498 - Shewana3_2107 0.64 -4.3 2,532,710 + Shewana3_2107 0.78 -0.3 2,532,710 + Shewana3_2107 0.78 -1.2 2,532,798 + Shewana3_2107 0.85 -0.9 2,532,884 - -3.1 2,533,028 - -2.4 2,533,174 + Shewana3_2108 0.23 -1.3 2,533,450 - Shewana3_2108 0.67 -1.4 2,533,853 + -1.5 2,533,890 - -2.7 2,533,924 + -3.0 2,533,972 + Shewana3_2110 0.13 -2.8 2,534,067 - Shewana3_2110 0.23 -3.3 2,534,113 + Shewana3_2110 0.28 -3.9 2,534,113 + Shewana3_2110 0.28 -2.1 2,534,353 - Shewana3_2110 0.52 -3.2 2,534,388 - Shewana3_2110 0.56 -4.9 2,534,528 + Shewana3_2110 0.70 -2.6 2,534,596 + Shewana3_2110 0.78 -2.5
Or see this region's nucleotide sequence