Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2108

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2107 and Shewana3_2108 are separated by 12 nucleotidesShewana3_2108 and Shewana3_2109 are separated by 11 nucleotidesShewana3_2109 and Shewana3_2110 overlap by 1 nucleotides Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018 _2107 Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657 _2108 Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845 _2109 Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813 _2110 Position (kb) 2533 2534Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2532.124 kb on + strand, within Shewana3_2107at 2532.124 kb on + strand, within Shewana3_2107at 2532.215 kb on + strand, within Shewana3_2107at 2532.266 kb on + strand, within Shewana3_2107at 2532.364 kb on - strand, within Shewana3_2107at 2532.436 kb on + strand, within Shewana3_2107at 2532.498 kb on - strand, within Shewana3_2107at 2532.710 kb on + strand, within Shewana3_2107at 2532.710 kb on + strand, within Shewana3_2107at 2532.798 kb on + strand, within Shewana3_2107at 2532.884 kb on - strandat 2533.028 kb on - strandat 2533.174 kb on + strand, within Shewana3_2108at 2533.450 kb on - strand, within Shewana3_2108at 2533.853 kb on + strandat 2533.890 kb on - strandat 2533.924 kb on + strandat 2533.972 kb on + strand, within Shewana3_2110at 2534.067 kb on - strand, within Shewana3_2110at 2534.113 kb on + strand, within Shewana3_2110at 2534.113 kb on + strand, within Shewana3_2110at 2534.353 kb on - strand, within Shewana3_2110at 2534.388 kb on - strand, within Shewana3_2110at 2534.528 kb on + strand, within Shewana3_2110at 2534.596 kb on + strand, within Shewana3_2110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
2,532,124 + Shewana3_2107 0.38 -3.0
2,532,124 + Shewana3_2107 0.38 -4.6
2,532,215 + Shewana3_2107 0.44 -2.2
2,532,266 + Shewana3_2107 0.48 -4.6
2,532,364 - Shewana3_2107 0.54 -3.1
2,532,436 + Shewana3_2107 0.59 -2.9
2,532,498 - Shewana3_2107 0.64 -4.3
2,532,710 + Shewana3_2107 0.78 -0.3
2,532,710 + Shewana3_2107 0.78 -1.2
2,532,798 + Shewana3_2107 0.85 -0.9
2,532,884 - -3.1
2,533,028 - -2.4
2,533,174 + Shewana3_2108 0.23 -1.3
2,533,450 - Shewana3_2108 0.67 -1.4
2,533,853 + -1.5
2,533,890 - -2.7
2,533,924 + -3.0
2,533,972 + Shewana3_2110 0.13 -2.8
2,534,067 - Shewana3_2110 0.23 -3.3
2,534,113 + Shewana3_2110 0.28 -3.9
2,534,113 + Shewana3_2110 0.28 -2.1
2,534,353 - Shewana3_2110 0.52 -3.2
2,534,388 - Shewana3_2110 0.56 -4.9
2,534,528 + Shewana3_2110 0.70 -2.6
2,534,596 + Shewana3_2110 0.78 -2.5

Or see this region's nucleotide sequence