Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1928 and Shewana3_1929 are separated by 205 nucleotides Shewana3_1929 and Shewana3_1930 are separated by 36 nucleotides Shewana3_1930 and Shewana3_1931 are separated by 260 nucleotides
Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550
_1928
Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205
_1929
Shewana3_1930: Shewana3_1930 - AraC family transcriptional regulator (RefSeq), at 2,294,242 to 2,295,132
_1930
Shewana3_1931: Shewana3_1931 - alpha-glucosidase (RefSeq), at 2,295,393 to 2,297,504
_1931
Position (kb)
2294
2295
2296 Strain fitness (log2 ratio)
-2
-1
0
1 at 2293.277 kb on + strand, within Shewana3_1928 at 2293.387 kb on + strand, within Shewana3_1928 at 2293.488 kb on + strand, within Shewana3_1928 at 2293.764 kb on + strand at 2294.126 kb on + strand, within Shewana3_1929 at 2294.137 kb on + strand, within Shewana3_1929 at 2294.601 kb on - strand, within Shewana3_1930 at 2294.652 kb on + strand, within Shewana3_1930 at 2294.746 kb on - strand, within Shewana3_1930 at 2294.844 kb on - strand, within Shewana3_1930 at 2294.985 kb on + strand, within Shewana3_1930 at 2295.213 kb on + strand at 2295.547 kb on - strand at 2295.549 kb on + strand at 2295.589 kb on - strand at 2295.941 kb on + strand, within Shewana3_1931 at 2295.941 kb on + strand, within Shewana3_1931 at 2295.995 kb on - strand, within Shewana3_1931 at 2296.039 kb on - strand, within Shewana3_1931
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,293,277 + Shewana3_1928 0.47 -0.4 2,293,387 + Shewana3_1928 0.68 -1.4 2,293,488 + Shewana3_1928 0.88 +1.6 2,293,764 + +0.8 2,294,126 + Shewana3_1929 0.82 +1.2 2,294,137 + Shewana3_1929 0.85 -1.1 2,294,601 - Shewana3_1930 0.40 -0.9 2,294,652 + Shewana3_1930 0.46 -1.3 2,294,746 - Shewana3_1930 0.57 -1.2 2,294,844 - Shewana3_1930 0.68 -0.1 2,294,985 + Shewana3_1930 0.83 -1.8 2,295,213 + +0.9 2,295,547 - -2.2 2,295,549 + -1.0 2,295,589 - -0.8 2,295,941 + Shewana3_1931 0.26 -0.0 2,295,941 + Shewana3_1931 0.26 +0.3 2,295,995 - Shewana3_1931 0.29 -0.4 2,296,039 - Shewana3_1931 0.31 +0.8
Or see this region's nucleotide sequence