Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1528

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1526 and Shewana3_1527 are separated by 151 nucleotidesShewana3_1527 and Shewana3_1528 are separated by 97 nucleotidesShewana3_1528 and Shewana3_1529 are separated by 261 nucleotides Shewana3_1526: Shewana3_1526 - hypothetical protein (RefSeq), at 1,776,417 to 1,777,379 _1526 Shewana3_1527: Shewana3_1527 - transposase IS200-family protein (RefSeq), at 1,777,531 to 1,777,968 _1527 Shewana3_1528: Shewana3_1528 - short chain dehydrogenase (RefSeq), at 1,778,066 to 1,778,803 _1528 Shewana3_1529: Shewana3_1529 - hypothetical protein (RefSeq), at 1,779,065 to 1,781,551 _1529 Position (kb) 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1at 1777.334 kb on + strandat 1777.342 kb on - strandat 1777.393 kb on - strandat 1777.558 kb on + strandat 1777.602 kb on - strand, within Shewana3_1527at 1777.602 kb on - strand, within Shewana3_1527at 1777.602 kb on - strand, within Shewana3_1527at 1778.280 kb on - strand, within Shewana3_1528at 1778.646 kb on - strand, within Shewana3_1528at 1778.983 kb on - strandat 1779.130 kb on + strandat 1779.153 kb on + strandat 1779.386 kb on + strand, within Shewana3_1529at 1779.493 kb on + strand, within Shewana3_1529at 1779.745 kb on - strand, within Shewana3_1529

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,777,334 + -0.1
1,777,342 - -1.1
1,777,393 - +0.5
1,777,558 + -0.6
1,777,602 - Shewana3_1527 0.16 -1.3
1,777,602 - Shewana3_1527 0.16 +0.7
1,777,602 - Shewana3_1527 0.16 +0.3
1,778,280 - Shewana3_1528 0.29 -1.7
1,778,646 - Shewana3_1528 0.79 -3.3
1,778,983 - +0.1
1,779,130 + -0.3
1,779,153 + -0.8
1,779,386 + Shewana3_1529 0.13 +0.0
1,779,493 + Shewana3_1529 0.17 +0.5
1,779,745 - Shewana3_1529 0.27 -2.0

Or see this region's nucleotide sequence