Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1526 and Shewana3_1527 are separated by 151 nucleotides Shewana3_1527 and Shewana3_1528 are separated by 97 nucleotides Shewana3_1528 and Shewana3_1529 are separated by 261 nucleotides
Shewana3_1526: Shewana3_1526 - hypothetical protein (RefSeq), at 1,776,417 to 1,777,379
_1526
Shewana3_1527: Shewana3_1527 - transposase IS200-family protein (RefSeq), at 1,777,531 to 1,777,968
_1527
Shewana3_1528: Shewana3_1528 - short chain dehydrogenase (RefSeq), at 1,778,066 to 1,778,803
_1528
Shewana3_1529: Shewana3_1529 - hypothetical protein (RefSeq), at 1,779,065 to 1,781,551
_1529
Position (kb)
1778
1779 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1777.334 kb on + strand at 1777.342 kb on - strand at 1777.393 kb on - strand at 1777.558 kb on + strand at 1777.602 kb on - strand, within Shewana3_1527 at 1777.602 kb on - strand, within Shewana3_1527 at 1777.602 kb on - strand, within Shewana3_1527 at 1778.280 kb on - strand, within Shewana3_1528 at 1778.646 kb on - strand, within Shewana3_1528 at 1778.983 kb on - strand at 1779.130 kb on + strand at 1779.153 kb on + strand at 1779.386 kb on + strand, within Shewana3_1529 at 1779.493 kb on + strand, within Shewana3_1529 at 1779.745 kb on - strand, within Shewana3_1529
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,777,334 + -0.1 1,777,342 - -1.1 1,777,393 - +0.5 1,777,558 + -0.6 1,777,602 - Shewana3_1527 0.16 -1.3 1,777,602 - Shewana3_1527 0.16 +0.7 1,777,602 - Shewana3_1527 0.16 +0.3 1,778,280 - Shewana3_1528 0.29 -1.7 1,778,646 - Shewana3_1528 0.79 -3.3 1,778,983 - +0.1 1,779,130 + -0.3 1,779,153 + -0.8 1,779,386 + Shewana3_1529 0.13 +0.0 1,779,493 + Shewana3_1529 0.17 +0.5 1,779,745 - Shewana3_1529 0.27 -2.0
Or see this region's nucleotide sequence