Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0756 and Shewana3_0757 are separated by 41 nucleotides Shewana3_0757 and Shewana3_0758 are separated by 234 nucleotides Shewana3_0758 and Shewana3_0759 are separated by 197 nucleotides
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Shewana3_0757: Shewana3_0757 - hypothetical protein (RefSeq), at 878,186 to 878,593
_0757
Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613
_0758
Shewana3_0759: Shewana3_0759 - peptidase M13 (RefSeq), at 879,811 to 881,895
_0759
Position (kb) 878
879
880 Strain fitness (log2 ratio) -1
0
1
2 at 878.005 kb on - strand, within Shewana3_0756 at 878.526 kb on - strand, within Shewana3_0757 at 878.578 kb on + strand at 878.625 kb on + strand at 878.700 kb on + strand at 878.801 kb on - strand at 878.881 kb on + strand at 878.910 kb on - strand, within Shewana3_0758 at 878.915 kb on + strand, within Shewana3_0758 at 878.928 kb on - strand, within Shewana3_0758 at 879.124 kb on + strand, within Shewana3_0758 at 879.191 kb on - strand, within Shewana3_0758 at 879.207 kb on - strand, within Shewana3_0758 at 879.281 kb on + strand, within Shewana3_0758 at 879.331 kb on + strand, within Shewana3_0758 at 879.414 kb on - strand, within Shewana3_0758 at 879.532 kb on - strand, within Shewana3_0758 at 879.642 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.934 kb on + strand at 879.942 kb on - strand at 880.132 kb on - strand, within Shewana3_0759 at 880.254 kb on - strand, within Shewana3_0759 at 880.417 kb on - strand, within Shewana3_0759 at 880.457 kb on + strand, within Shewana3_0759 at 880.463 kb on - strand, within Shewana3_0759
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 878,005 - Shewana3_0756 0.72 +0.4 878,526 - Shewana3_0757 0.83 +0.4 878,578 + +0.5 878,625 + +2.5 878,700 + +0.7 878,801 - -1.2 878,881 + -1.5 878,910 - Shewana3_0758 0.10 +0.1 878,915 + Shewana3_0758 0.11 +0.4 878,928 - Shewana3_0758 0.13 +1.3 879,124 + Shewana3_0758 0.38 +0.4 879,191 - Shewana3_0758 0.46 +0.3 879,207 - Shewana3_0758 0.48 -1.5 879,281 + Shewana3_0758 0.58 +0.5 879,331 + Shewana3_0758 0.64 +0.6 879,414 - Shewana3_0758 0.75 +0.6 879,532 - Shewana3_0758 0.90 -1.2 879,642 - +0.7 879,878 + +0.7 879,886 - +0.3 879,886 - -0.4 879,886 - -1.6 879,934 + -0.1 879,942 - +0.3 880,132 - Shewana3_0759 0.15 +0.4 880,254 - Shewana3_0759 0.21 -0.2 880,417 - Shewana3_0759 0.29 +0.6 880,457 + Shewana3_0759 0.31 +1.8 880,463 - Shewana3_0759 0.31 +1.0
Or see this region's nucleotide sequence