Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides Shewana3_0754 and Shewana3_0755 are separated by 117 nucleotides Shewana3_0755 and Shewana3_0756 are separated by 72 nucleotides
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571
_0755
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Position (kb)
874
875
876
877 Strain fitness (log2 ratio)
-2
-1
0
1 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand at 874.539 kb on + strand, within Shewana3_0754 at 874.775 kb on + strand, within Shewana3_0754 at 874.782 kb on - strand, within Shewana3_0754 at 875.159 kb on + strand, within Shewana3_0754 at 875.206 kb on - strand, within Shewana3_0754 at 875.306 kb on + strand, within Shewana3_0754 at 875.386 kb on + strand, within Shewana3_0754 at 875.399 kb on + strand, within Shewana3_0754 at 875.722 kb on - strand, within Shewana3_0754 at 875.790 kb on - strand, within Shewana3_0754 at 876.098 kb on + strand, within Shewana3_0754 at 876.154 kb on + strand, within Shewana3_0754 at 876.346 kb on + strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.457 kb on - strand, within Shewana3_0754 at 876.596 kb on - strand at 877.040 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.329 kb on + strand, within Shewana3_0755 at 877.337 kb on - strand, within Shewana3_0755 at 877.565 kb on + strand at 877.751 kb on + strand, within Shewana3_0756 at 877.751 kb on + strand, within Shewana3_0756 at 877.814 kb on - strand, within Shewana3_0756
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 873,261 + Shewana3_0752 0.88 +0.2 873,452 + +0.3 873,526 - +0.0 873,555 + Shewana3_0753 0.11 +0.7 873,686 - Shewana3_0753 0.35 -2.5 873,957 - Shewana3_0753 0.85 +0.1 874,080 - -1.7 874,254 + +0.7 874,264 + +0.3 874,303 + -0.1 874,317 + +0.6 874,354 - -0.3 874,378 + -0.7 874,388 - +0.8 874,539 + Shewana3_0754 0.12 +0.2 874,775 + Shewana3_0754 0.21 +0.1 874,782 - Shewana3_0754 0.21 +0.0 875,159 + Shewana3_0754 0.36 -1.3 875,206 - Shewana3_0754 0.37 +0.5 875,306 + Shewana3_0754 0.41 -1.6 875,386 + Shewana3_0754 0.44 +0.5 875,399 + Shewana3_0754 0.45 -0.9 875,722 - Shewana3_0754 0.57 +0.6 875,790 - Shewana3_0754 0.60 -0.1 876,098 + Shewana3_0754 0.72 -0.0 876,154 + Shewana3_0754 0.74 +0.1 876,346 + Shewana3_0754 0.81 -1.7 876,354 - Shewana3_0754 0.82 +0.7 876,354 - Shewana3_0754 0.82 +0.6 876,457 - Shewana3_0754 0.86 +0.9 876,596 - +0.2 877,040 + Shewana3_0755 0.16 +0.1 877,319 + Shewana3_0755 0.60 +1.0 877,319 + Shewana3_0755 0.60 +0.6 877,327 - Shewana3_0755 0.61 +0.7 877,327 - Shewana3_0755 0.61 -0.0 877,329 + Shewana3_0755 0.61 +0.2 877,337 - Shewana3_0755 0.63 +0.3 877,565 + +0.6 877,751 + Shewana3_0756 0.21 +0.2 877,751 + Shewana3_0756 0.21 +0.0 877,814 - Shewana3_0756 0.34 -0.1
Or see this region's nucleotide sequence