Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0754

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0752 and Shewana3_0753 are separated by 83 nucleotidesShewana3_0753 and Shewana3_0754 are separated by 199 nucleotidesShewana3_0754 and Shewana3_0755 are separated by 117 nucleotidesShewana3_0755 and Shewana3_0756 are separated by 72 nucleotides Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413 _0752 Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039 _0753 Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824 _0754 Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571 _0755 Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144 _0756 Position (kb) 874 875 876 877Strain fitness (log2 ratio) -2 -1 0 1at 873.261 kb on + strand, within Shewana3_0752at 873.452 kb on + strandat 873.526 kb on - strandat 873.555 kb on + strand, within Shewana3_0753at 873.686 kb on - strand, within Shewana3_0753at 873.957 kb on - strand, within Shewana3_0753at 874.080 kb on - strandat 874.254 kb on + strandat 874.264 kb on + strandat 874.303 kb on + strandat 874.317 kb on + strandat 874.354 kb on - strandat 874.378 kb on + strandat 874.388 kb on - strandat 874.539 kb on + strand, within Shewana3_0754at 874.775 kb on + strand, within Shewana3_0754at 874.782 kb on - strand, within Shewana3_0754at 875.159 kb on + strand, within Shewana3_0754at 875.206 kb on - strand, within Shewana3_0754at 875.306 kb on + strand, within Shewana3_0754at 875.386 kb on + strand, within Shewana3_0754at 875.399 kb on + strand, within Shewana3_0754at 875.722 kb on - strand, within Shewana3_0754at 875.790 kb on - strand, within Shewana3_0754at 876.098 kb on + strand, within Shewana3_0754at 876.154 kb on + strand, within Shewana3_0754at 876.346 kb on + strand, within Shewana3_0754at 876.354 kb on - strand, within Shewana3_0754at 876.354 kb on - strand, within Shewana3_0754at 876.457 kb on - strand, within Shewana3_0754at 876.596 kb on - strandat 877.040 kb on + strand, within Shewana3_0755at 877.319 kb on + strand, within Shewana3_0755at 877.319 kb on + strand, within Shewana3_0755at 877.327 kb on - strand, within Shewana3_0755at 877.327 kb on - strand, within Shewana3_0755at 877.329 kb on + strand, within Shewana3_0755at 877.337 kb on - strand, within Shewana3_0755at 877.565 kb on + strandat 877.751 kb on + strand, within Shewana3_0756at 877.751 kb on + strand, within Shewana3_0756at 877.814 kb on - strand, within Shewana3_0756

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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873,261 + Shewana3_0752 0.88 +0.2
873,452 + +0.3
873,526 - +0.0
873,555 + Shewana3_0753 0.11 +0.7
873,686 - Shewana3_0753 0.35 -2.5
873,957 - Shewana3_0753 0.85 +0.1
874,080 - -1.7
874,254 + +0.7
874,264 + +0.3
874,303 + -0.1
874,317 + +0.6
874,354 - -0.3
874,378 + -0.7
874,388 - +0.8
874,539 + Shewana3_0754 0.12 +0.2
874,775 + Shewana3_0754 0.21 +0.1
874,782 - Shewana3_0754 0.21 +0.0
875,159 + Shewana3_0754 0.36 -1.3
875,206 - Shewana3_0754 0.37 +0.5
875,306 + Shewana3_0754 0.41 -1.6
875,386 + Shewana3_0754 0.44 +0.5
875,399 + Shewana3_0754 0.45 -0.9
875,722 - Shewana3_0754 0.57 +0.6
875,790 - Shewana3_0754 0.60 -0.1
876,098 + Shewana3_0754 0.72 -0.0
876,154 + Shewana3_0754 0.74 +0.1
876,346 + Shewana3_0754 0.81 -1.7
876,354 - Shewana3_0754 0.82 +0.7
876,354 - Shewana3_0754 0.82 +0.6
876,457 - Shewana3_0754 0.86 +0.9
876,596 - +0.2
877,040 + Shewana3_0755 0.16 +0.1
877,319 + Shewana3_0755 0.60 +1.0
877,319 + Shewana3_0755 0.60 +0.6
877,327 - Shewana3_0755 0.61 +0.7
877,327 - Shewana3_0755 0.61 -0.0
877,329 + Shewana3_0755 0.61 +0.2
877,337 - Shewana3_0755 0.63 +0.3
877,565 + +0.6
877,751 + Shewana3_0756 0.21 +0.2
877,751 + Shewana3_0756 0.21 +0.0
877,814 - Shewana3_0756 0.34 -0.1

Or see this region's nucleotide sequence