Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0548 and Shewana3_0549 are separated by 74 nucleotides Shewana3_0549 and Shewana3_0550 are separated by 43 nucleotides Shewana3_0550 and Shewana3_0551 are separated by 6 nucleotides Shewana3_0551 and Shewana3_0552 are separated by 149 nucleotides
Shewana3_0548: Shewana3_0548 - no description, at 643,219 to 644,016
_0548
Shewana3_0549: Shewana3_0549 - hypothetical protein (RefSeq), at 644,091 to 644,555
_0549
Shewana3_0550: Shewana3_0550 - hypothetical protein (RefSeq), at 644,599 to 645,108
_0550
Shewana3_0551: Shewana3_0551 - hypothetical protein (RefSeq), at 645,115 to 645,429
_0551
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 643.602 kb on + strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.709 kb on - strand, within Shewana3_0548 at 643.944 kb on - strand at 644.047 kb on + strand at 644.079 kb on - strand at 644.125 kb on - strand at 644.143 kb on + strand, within Shewana3_0549 at 644.201 kb on - strand, within Shewana3_0549 at 644.202 kb on + strand, within Shewana3_0549 at 644.231 kb on - strand, within Shewana3_0549 at 644.290 kb on - strand, within Shewana3_0549 at 644.321 kb on + strand, within Shewana3_0549 at 644.407 kb on + strand, within Shewana3_0549 at 644.843 kb on + strand, within Shewana3_0550 at 644.898 kb on + strand, within Shewana3_0550 at 644.924 kb on + strand, within Shewana3_0550 at 645.151 kb on + strand, within Shewana3_0551 at 645.172 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.322 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 643,602 + Shewana3_0548 0.48 +0.0 643,602 + Shewana3_0548 0.48 +0.2 643,709 - Shewana3_0548 0.61 -0.9 643,944 - -0.9 644,047 + +1.2 644,079 - -1.3 644,125 - -1.8 644,143 + Shewana3_0549 0.11 +0.4 644,201 - Shewana3_0549 0.24 +0.5 644,202 + Shewana3_0549 0.24 +0.4 644,231 - Shewana3_0549 0.30 +0.1 644,290 - Shewana3_0549 0.43 +0.1 644,321 + Shewana3_0549 0.49 +0.3 644,407 + Shewana3_0549 0.68 +1.0 644,843 + Shewana3_0550 0.48 +0.4 644,898 + Shewana3_0550 0.59 -1.8 644,924 + Shewana3_0550 0.64 -1.2 645,151 + Shewana3_0551 0.11 -1.9 645,172 + Shewana3_0551 0.18 +0.8 645,239 + Shewana3_0551 0.39 +0.3 645,239 + Shewana3_0551 0.39 -0.9 645,314 + Shewana3_0551 0.63 +0.1 645,314 + Shewana3_0551 0.63 +0.9 645,322 - Shewana3_0551 0.66 -0.7 645,362 - Shewana3_0551 0.78 -2.2 645,362 - Shewana3_0551 0.78 +0.3 645,707 + Shewana3_0552 0.41 -0.1 645,707 + Shewana3_0552 0.41 +0.3 645,715 - Shewana3_0552 0.44 +0.0
Or see this region's nucleotide sequence