Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0472 and Shewana3_0473 are separated by 103 nucleotides Shewana3_0473 and Shewana3_0474 are separated by 373 nucleotides Shewana3_0474 and Shewana3_0475 are separated by 146 nucleotides
Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079
_0472
Shewana3_0473: Shewana3_0473 - hypothetical protein (RefSeq), at 550,183 to 550,599
_0473
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Shewana3_0475: Shewana3_0475 - hypothetical protein (RefSeq), at 552,181 to 553,326
_0475
Position (kb) 550
551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 550.175 kb on + strand at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.296 kb on - strand, within Shewana3_0473 at 550.349 kb on - strand, within Shewana3_0473 at 550.356 kb on - strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.399 kb on - strand, within Shewana3_0473 at 550.425 kb on - strand, within Shewana3_0473 at 550.433 kb on - strand, within Shewana3_0473 at 550.466 kb on - strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.480 kb on + strand, within Shewana3_0473 at 550.489 kb on - strand, within Shewana3_0473 at 550.515 kb on + strand, within Shewana3_0473 at 550.536 kb on + strand, within Shewana3_0473 at 550.544 kb on - strand, within Shewana3_0473 at 550.554 kb on - strand, within Shewana3_0473 at 550.597 kb on + strand at 550.597 kb on + strand at 550.605 kb on - strand at 550.623 kb on + strand at 550.806 kb on - strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.826 kb on + strand at 550.826 kb on + strand at 550.847 kb on - strand at 550.976 kb on - strand at 550.976 kb on - strand at 551.044 kb on + strand at 551.049 kb on + strand at 551.049 kb on + strand at 551.057 kb on - strand at 551.108 kb on - strand, within Shewana3_0474 at 551.157 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.307 kb on - strand, within Shewana3_0474 at 551.314 kb on - strand, within Shewana3_0474 at 551.341 kb on + strand, within Shewana3_0474 at 551.460 kb on + strand, within Shewana3_0474 at 551.680 kb on + strand, within Shewana3_0474 at 551.718 kb on - strand, within Shewana3_0474 at 551.759 kb on + strand, within Shewana3_0474 at 551.769 kb on - strand, within Shewana3_0474 at 551.853 kb on + strand, within Shewana3_0474 at 552.003 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.290 kb on - strand at 552.301 kb on + strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.335 kb on - strand, within Shewana3_0475 at 552.360 kb on + strand, within Shewana3_0475 at 552.415 kb on + strand, within Shewana3_0475 at 552.438 kb on + strand, within Shewana3_0475 at 552.553 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.842 kb on - strand, within Shewana3_0475 at 553.023 kb on - strand, within Shewana3_0475
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 550,175 + +0.9 550,288 + Shewana3_0473 0.25 +0.4 550,288 + Shewana3_0473 0.25 +0.1 550,288 + Shewana3_0473 0.25 +0.5 550,296 - Shewana3_0473 0.27 +0.2 550,349 - Shewana3_0473 0.40 -1.1 550,356 - Shewana3_0473 0.41 +0.4 550,391 + Shewana3_0473 0.50 -0.0 550,391 + Shewana3_0473 0.50 +0.3 550,399 - Shewana3_0473 0.52 +0.5 550,425 - Shewana3_0473 0.58 +0.4 550,433 - Shewana3_0473 0.60 -1.0 550,466 - Shewana3_0473 0.68 +1.0 550,470 + Shewana3_0473 0.69 -1.6 550,470 + Shewana3_0473 0.69 +0.2 550,470 + Shewana3_0473 0.69 +0.3 550,470 + Shewana3_0473 0.69 -0.1 550,471 + Shewana3_0473 0.69 +0.3 550,471 + Shewana3_0473 0.69 -0.1 550,471 + Shewana3_0473 0.69 +0.4 550,471 + Shewana3_0473 0.69 +0.3 550,479 - Shewana3_0473 0.71 +0.8 550,479 - Shewana3_0473 0.71 +0.4 550,479 - Shewana3_0473 0.71 +1.1 550,480 + Shewana3_0473 0.71 -0.0 550,489 - Shewana3_0473 0.73 -1.2 550,515 + Shewana3_0473 0.80 -0.1 550,536 + Shewana3_0473 0.85 -0.1 550,544 - Shewana3_0473 0.87 +0.3 550,554 - Shewana3_0473 0.89 +0.4 550,597 + +0.6 550,597 + -1.7 550,605 - -0.1 550,623 + +0.6 550,806 - +0.3 550,811 + -0.7 550,811 + +0.2 550,811 + -1.3 550,811 + -0.7 550,811 + +1.2 550,811 + +0.3 550,811 + -1.4 550,811 + +0.7 550,811 + -0.0 550,811 + +0.2 550,819 - +0.5 550,819 - +0.7 550,819 - -1.0 550,819 - +0.5 550,826 + -0.8 550,826 + +0.1 550,847 - -2.3 550,976 - +0.9 550,976 - -0.9 551,044 + +0.4 551,049 + +0.6 551,049 + +0.2 551,057 - -1.3 551,108 - Shewana3_0474 0.13 -0.1 551,157 + Shewana3_0474 0.17 +0.3 551,299 + Shewana3_0474 0.31 +0.6 551,299 + Shewana3_0474 0.31 -0.8 551,306 + Shewana3_0474 0.31 +0.3 551,306 + Shewana3_0474 0.31 +0.6 551,306 + Shewana3_0474 0.31 +0.2 551,307 - Shewana3_0474 0.31 +0.3 551,314 - Shewana3_0474 0.32 +0.2 551,341 + Shewana3_0474 0.35 +0.5 551,460 + Shewana3_0474 0.46 +0.2 551,680 + Shewana3_0474 0.67 -0.2 551,718 - Shewana3_0474 0.70 +0.7 551,759 + Shewana3_0474 0.74 +0.2 551,769 - Shewana3_0474 0.75 +1.2 551,853 + Shewana3_0474 0.83 -1.1 552,003 + +0.1 552,253 + +1.1 552,253 + -0.6 552,290 - +0.1 552,301 + Shewana3_0475 0.10 +0.4 552,309 - Shewana3_0475 0.11 +0.4 552,309 - Shewana3_0475 0.11 +0.5 552,335 - Shewana3_0475 0.13 -1.2 552,360 + Shewana3_0475 0.16 -1.7 552,415 + Shewana3_0475 0.20 +0.5 552,438 + Shewana3_0475 0.22 -0.2 552,553 + Shewana3_0475 0.32 -3.6 552,827 + Shewana3_0475 0.56 +0.7 552,827 + Shewana3_0475 0.56 +0.2 552,835 - Shewana3_0475 0.57 +0.3 552,835 - Shewana3_0475 0.57 -1.6 552,842 - Shewana3_0475 0.58 +0.1 553,023 - Shewana3_0475 0.73 +0.0
Or see this region's nucleotide sequence