Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4293 and Shewana3_4294 are separated by 465 nucleotides Shewana3_4294 and Shewana3_4295 are separated by 169 nucleotides
Shewana3_4293: Shewana3_4293 - outer membrane porin (RefSeq), at 175,971 to 177,167
_4293
Shewana3_4294: Shewana3_4294 - hypothetical protein (RefSeq), at 177,633 to 177,914
_4294
Shewana3_4295: Shewana3_4295 - sensor kinase CusS (RefSeq), at 178,084 to 179,559
_4295
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.681 kb on + strand, within Shewana3_4293 at 176.759 kb on + strand, within Shewana3_4293 at 176.874 kb on - strand at 176.875 kb on + strand, within Shewana3_4293 at 176.876 kb on + strand, within Shewana3_4293 at 176.876 kb on + strand, within Shewana3_4293 at 176.888 kb on + strand, within Shewana3_4293 at 176.896 kb on - strand, within Shewana3_4293 at 176.910 kb on - strand, within Shewana3_4293 at 176.943 kb on + strand, within Shewana3_4293 at 176.951 kb on - strand, within Shewana3_4293 at 176.951 kb on - strand, within Shewana3_4293 at 176.999 kb on - strand, within Shewana3_4293 at 177.001 kb on + strand, within Shewana3_4293 at 177.153 kb on + strand at 177.161 kb on + strand at 177.234 kb on + strand at 177.234 kb on + strand at 177.254 kb on - strand at 177.349 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.391 kb on - strand at 177.391 kb on - strand at 177.391 kb on - strand at 177.563 kb on - strand at 177.563 kb on - strand at 177.656 kb on + strand at 177.664 kb on - strand, within Shewana3_4294 at 177.817 kb on + strand, within Shewana3_4294 at 177.928 kb on - strand at 178.039 kb on + strand at 178.180 kb on - strand at 178.350 kb on + strand, within Shewana3_4295 at 178.364 kb on + strand, within Shewana3_4295 at 178.453 kb on - strand, within Shewana3_4295 at 178.502 kb on - strand, within Shewana3_4295 at 178.575 kb on + strand, within Shewana3_4295 at 178.638 kb on - strand, within Shewana3_4295 at 178.649 kb on + strand, within Shewana3_4295
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 176,681 + Shewana3_4293 0.59 +0.3 176,759 + Shewana3_4293 0.66 +0.5 176,874 - -0.6 176,875 + Shewana3_4293 0.76 +0.2 176,876 + Shewana3_4293 0.76 +0.1 176,876 + Shewana3_4293 0.76 -0.8 176,888 + Shewana3_4293 0.77 -2.0 176,896 - Shewana3_4293 0.77 -3.7 176,910 - Shewana3_4293 0.78 -0.1 176,943 + Shewana3_4293 0.81 -1.9 176,951 - Shewana3_4293 0.82 -1.1 176,951 - Shewana3_4293 0.82 -1.9 176,999 - Shewana3_4293 0.86 +0.0 177,001 + Shewana3_4293 0.86 +0.2 177,153 + +0.7 177,161 + -1.9 177,234 + -0.0 177,234 + +0.5 177,254 - -1.4 177,349 + -0.9 177,373 + -1.6 177,373 + +0.2 177,373 + +0.9 177,373 + +0.6 177,381 - +0.2 177,381 - +0.8 177,381 - +1.1 177,381 - -0.2 177,391 - -0.2 177,391 - -0.6 177,391 - +0.6 177,563 - -1.4 177,563 - -1.0 177,656 + +0.5 177,664 - Shewana3_4294 0.11 +0.1 177,817 + Shewana3_4294 0.65 +0.3 177,928 - -0.0 178,039 + +0.3 178,180 - -0.6 178,350 + Shewana3_4295 0.18 -0.1 178,364 + Shewana3_4295 0.19 +0.4 178,453 - Shewana3_4295 0.25 -1.7 178,502 - Shewana3_4295 0.28 +0.3 178,575 + Shewana3_4295 0.33 +0.9 178,638 - Shewana3_4295 0.38 -0.7 178,649 + Shewana3_4295 0.38 -0.9
Or see this region's nucleotide sequence