Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4171 and Shewana3_4172 are separated by 580 nucleotides Shewana3_4172 and Shewana3_4173 overlap by 4 nucleotides Shewana3_4173 and Shewana3_4174 are separated by 205 nucleotides
Shewana3_4171: Shewana3_4171 - hypothetical protein (RefSeq), at 36,438 to 37,784
_4171
Shewana3_4172: Shewana3_4172 - DNA-directed DNA polymerase (RefSeq), at 38,365 to 39,615
_4172
Shewana3_4173: Shewana3_4173 - putative prophage repressor (RefSeq), at 39,612 to 40,346
_4173
Shewana3_4174: Shewana3_4174 - hypothetical protein (RefSeq), at 40,552 to 40,911
_4174
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.397 kb on - strand, within Shewana3_4171 at 37.583 kb on + strand, within Shewana3_4171 at 37.664 kb on - strand at 37.703 kb on - strand at 37.856 kb on + strand at 37.871 kb on + strand at 37.871 kb on + strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.898 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 38.031 kb on + strand at 38.093 kb on + strand at 38.106 kb on - strand at 38.117 kb on - strand at 38.122 kb on - strand at 38.140 kb on + strand at 38.335 kb on + strand at 38.478 kb on - strand at 38.528 kb on - strand, within Shewana3_4172 at 38.557 kb on - strand, within Shewana3_4172 at 38.602 kb on + strand, within Shewana3_4172 at 38.795 kb on + strand, within Shewana3_4172 at 38.803 kb on + strand, within Shewana3_4172 at 39.001 kb on + strand, within Shewana3_4172 at 39.059 kb on + strand, within Shewana3_4172 at 39.066 kb on + strand, within Shewana3_4172 at 39.164 kb on + strand, within Shewana3_4172 at 39.182 kb on - strand, within Shewana3_4172 at 39.183 kb on - strand, within Shewana3_4172 at 39.270 kb on - strand, within Shewana3_4172 at 39.463 kb on + strand, within Shewana3_4172 at 39.497 kb on + strand at 39.564 kb on + strand at 39.608 kb on - strand at 39.649 kb on - strand at 39.663 kb on - strand at 39.681 kb on + strand at 39.694 kb on + strand, within Shewana3_4173 at 39.747 kb on + strand, within Shewana3_4173 at 39.755 kb on - strand, within Shewana3_4173 at 39.784 kb on + strand, within Shewana3_4173 at 39.852 kb on + strand, within Shewana3_4173 at 40.203 kb on - strand, within Shewana3_4173 at 40.244 kb on + strand, within Shewana3_4173 at 40.304 kb on - strand at 40.459 kb on + strand at 40.467 kb on - strand at 40.477 kb on - strand at 40.526 kb on + strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 37,397 - Shewana3_4171 0.71 -1.2 37,583 + Shewana3_4171 0.85 +0.4 37,664 - +0.4 37,703 - +1.4 37,856 + -1.6 37,871 + -2.1 37,871 + +0.9 37,879 - -2.3 37,879 - +1.0 37,879 - +0.4 37,898 - +0.8 37,956 - +0.5 37,956 - +0.0 37,956 - -1.8 38,031 + -0.1 38,093 + +0.4 38,106 - -1.9 38,117 - +0.4 38,122 - +0.9 38,140 + +0.1 38,335 + +0.5 38,478 - -0.6 38,528 - Shewana3_4172 0.13 -0.2 38,557 - Shewana3_4172 0.15 -0.7 38,602 + Shewana3_4172 0.19 -1.6 38,795 + Shewana3_4172 0.34 -1.8 38,803 + Shewana3_4172 0.35 +0.7 39,001 + Shewana3_4172 0.51 -2.1 39,059 + Shewana3_4172 0.55 -2.1 39,066 + Shewana3_4172 0.56 +0.2 39,164 + Shewana3_4172 0.64 -0.5 39,182 - Shewana3_4172 0.65 +0.2 39,183 - Shewana3_4172 0.65 +0.9 39,270 - Shewana3_4172 0.72 -1.3 39,463 + Shewana3_4172 0.88 -0.4 39,497 + +0.9 39,564 + -1.4 39,608 - -0.1 39,649 - +0.6 39,663 - +0.6 39,681 + -1.2 39,694 + Shewana3_4173 0.11 +0.1 39,747 + Shewana3_4173 0.18 -1.2 39,755 - Shewana3_4173 0.19 +0.5 39,784 + Shewana3_4173 0.23 +0.2 39,852 + Shewana3_4173 0.33 -0.4 40,203 - Shewana3_4173 0.80 +0.4 40,244 + Shewana3_4173 0.86 +0.5 40,304 - -1.6 40,459 + -0.7 40,467 - +0.6 40,477 - +0.6 40,526 + -0.4 40,544 - +0.8 40,544 - +0.2 40,544 - +0.7 40,544 - -3.1 40,573 - +0.5
Or see this region's nucleotide sequence