Strain Fitness in Shewanella loihica PV-4 around Shew_3462

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmraW and Shew_3462 are separated by 33 nucleotidesShew_3462 and Shew_3463 are separated by 414 nucleotides Shew_3461: mraW - S-adenosyl-methyltransferase MraW (RefSeq), at 4,144,831 to 4,145,772 mraW Shew_3462: Shew_3462 - cell division protein MraZ (RefSeq), at 4,145,806 to 4,146,264 _3462 Shew_3463: Shew_3463 - PepSY-associated TM helix domain-containing protein (RefSeq), at 4,146,679 to 4,147,389 _3463 Position (kb) 4145 4146 4147Strain fitness (log2 ratio) -1 0 1at 4146.530 kb on - strandat 4146.596 kb on + strandat 4146.604 kb on - strandat 4146.620 kb on + strandat 4146.627 kb on - strandat 4146.694 kb on - strandat 4146.836 kb on + strand, within Shew_3463at 4146.916 kb on - strand, within Shew_3463at 4146.916 kb on - strand, within Shew_3463at 4146.970 kb on + strand, within Shew_3463

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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4,146,530 - -0.6
4,146,596 + +0.0
4,146,604 - +0.2
4,146,620 + +0.6
4,146,627 - -1.0
4,146,694 - -0.3
4,146,836 + Shew_3463 0.22 +0.4
4,146,916 - Shew_3463 0.33 +0.1
4,146,916 - Shew_3463 0.33 -0.6
4,146,970 + Shew_3463 0.41 +0.1

Or see this region's nucleotide sequence