Strain Fitness in Shewanella loihica PV-4 around Shew_1038

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1037 and Shew_1038 are separated by 694 nucleotidesShew_1038 and Shew_1039 are separated by 34 nucleotides Shew_1037: Shew_1037 - DNA mismatch repair protein (RefSeq), at 1,199,866 to 1,200,537 _1037 Shew_1038: Shew_1038 - dinucleoside polyphosphate hydrolase (RefSeq), at 1,201,232 to 1,201,756 _1038 Shew_1039: Shew_1039 - phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq), at 1,201,791 to 1,204,022 _1039 Position (kb) 1201 1202Strain fitness (log2 ratio) -1 0 1at 1200.403 kb on - strand, within Shew_1037at 1200.462 kb on + strand, within Shew_1037at 1200.770 kb on - strandat 1201.799 kb on - strandat 1201.864 kb on - strandat 1202.308 kb on + strand, within Shew_1039at 1202.336 kb on - strand, within Shew_1039at 1202.628 kb on - strand, within Shew_1039at 1202.749 kb on + strand, within Shew_1039

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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1,200,403 - Shew_1037 0.80 +0.6
1,200,462 + Shew_1037 0.89 -0.4
1,200,770 - +0.7
1,201,799 - -0.8
1,201,864 - -1.4
1,202,308 + Shew_1039 0.23 +0.7
1,202,336 - Shew_1039 0.24 +0.2
1,202,628 - Shew_1039 0.38 -0.5
1,202,749 + Shew_1039 0.43 +0.2

Or see this region's nucleotide sequence